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Dear author,
Thank you for the nice pipeline. I recently ran nextNEOpi pipeline on one sample( DNA tumor, DNA normal and RNA tumor).
The pipeline produced all expected five folders. However, in a…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
4.2.1
### Python Version
Python 3.11.6
### Operating System
_No response_
### Describe the bug
Hello,
…
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https://mp.weixin.qq.com/s/9SUcWmqfHNukADZuQiHVoA
ixxmu updated
1 month ago
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Hi,
I would like to ask for help in consequences of swapping containers for pVACtools. But first I want to explain why I'm doing this.
1) I was running predictions with your original containers but …
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I got an error when installing pandora using Conda,
Could not solve for environment specs
Encountered problems while solving:
- package csb-pandora-2.0.0beta2-py311_0 requires blast 2.10.*, bu…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
3.0.2
### Python Version
_No response_
### Operating System
_No response_
### Describe the bug
I'm executing pvac for a p…
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Hi,
i'm encountering a chmod issue with pVACSeq:
```
executor > local (3)
[- ] process > merge_fastq -
[a4/caf946] process > RegionsBedToIntervalList (R... [100%] 1…
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### Installation Type
Standalone
### pVACtools Version / Docker Image
latest edition
### Python Version
3.8
### Operating System
Linux
### Describe the bug
Prompt MHCstab connection reset whi…
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I put the codes below in the PANDORA.py
from PANDORA import Target
from PANDORA import Pandora
from PANDORA import Database
db = Database.load()
target = Target(id = 'ara1',
N_chain_seq= …
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Hi,
I am running the entire nextNEOpi pipeline on the TESLA dataset https://doi.org/10.1016/j.cell.2020.09.015 Currently, I'm experiencing issues with pVACsec for data from patient1, specifically som…