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Hello,I don‘t know How to save segmentation results in NIFTI format?
I use the “export segmentation ” at GUI ,then I get an RGB image in DICOM format.
I was wondering where I should find the origina…
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Should we register the NIfTI file format with FileIO?
I guess it'd just be something like this:
```Julia
add_format(format"NIfTI", (), ".nii") #
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### Motivation
Suggested by Chris via email:
> Most the of the imaging data (of ENIGMA-PD and otherwise) is nowadays organized according to BIDS format. I would advise to either modify the script …
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## Description
When conforming happens from inside run_prediction it adds incorrect "TR" information to the image header.
## Steps to Reproduce
Run run_prediction with an already conform inp…
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Hi, I wanted to know what is the approach to predict an image's masks using pairs of image and masks as support.
Is there some required preprocessing? Do I have to save my data into some specific for…
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### What feature or change would you like to see made?
When I use dicom file to initialize Volume and use segmentations, can I export the segmentations to the local file in nifti format
### Why …
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Currently, I'm using TotalSegmentator for scanner segmentation, which generates multiple NIFTI format files for each class.
However, I'm facing challenges with effectively importing and displaying…
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My wishlist of image formats that are heavily used in life sciences and should be supported by Galaxy:
- [ ] DICOM #18895
- [x] NIfTI https://github.com/galaxyproject/galaxy/pull/11020
- [x] ome-t…
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### Description of Problem / Inefficiency:
The goal is to support XML/REC is Shimming Toolbox. This can be done in different ways, either through a conversion (like we do for dicoms), or through a xm…
po09i updated
9 months ago
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BIDS accepts ome-zarr data in its microscopy extension, but not in its main MRI-related specification.
In most cases, MRI volumes are small enough that chunked formats do not make sense, but MRIs…