UCL-ARC Enigma-PD-WML issues

UCL-ARC / Enigma-PD-WML

Segment White Mater Lesions (WML) in T1-weighted and FLAIR MRI images using FSL and U-Net

BSD 3-Clause "New" or "Revised" License

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issues

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FLAIR fails brain extraction

#19 HamiedGH opened 4 weeks ago
0
search for T1 and FLAIR anywhere in ${data_path}/${subjid}

#18 HamiedGH opened 4 weeks ago
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added a line to the readme

#17 K-Meech closed 1 month ago
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Expand user/developer documentation

#16 K-Meech closed 1 month ago
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Add flag to allow completed steps to be skipped

#15 K-Meech closed 2 months ago
1
Add flag to allow completed steps to be skipped

#14 K-Meech closed 2 months ago
0
Add support for input data in BIDS format

#13 p-j-smith opened 2 months ago
3
Add one log per sample and parallel flag

#12 K-Meech closed 2 months ago
0
Add action to upload to dockerhub

#11 K-Meech closed 2 months ago
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Add GitHub action to build and publish image to Dockerhub when a release is made

#10 p-j-smith closed 2 months ago
1
Use miniforge base image and install only required FSL packages

#9 p-j-smith opened 2 months ago
0
Add dockerfiles and latest analysis script

#8 K-Meech closed 2 months ago
0
Add input argument to set number of cores

#7 p-j-smith closed 2 months ago
1
Add flag to optionally cleanup intermediate files

#6 p-j-smith opened 2 months ago
0
Add the DICOM to NIFTI conversion to the Dockerfile

#5 p-j-smith opened 2 months ago
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Publish the image to DockerHub when a new GitHub release is made

#4 p-j-smith closed 2 months ago
1
Documentation improvements

#3 p-j-smith opened 2 months ago
0
Add Dockerfile for running analysis pipeline

#2 p-j-smith closed 2 months ago
0
Setup workflows and issue templates

#1 p-j-smith closed 2 months ago
0