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(MeNeXt) PS E:\PythonProject\MedNeXt> mednextv1_plan_and_preprocess -t 521 -pl3d ExperimentPlanner3D_v21_customTargetSpacing_1x1x1
E:\PythonProject\MedNeXt\mednext\DATASET\nnUNet_raw_data_base\nnUNet…
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This issue describes the work done to train a MedNext model and to evaluate its performance.
Work is done under the branch `plb/monai_unet`.
The code containing the MedNext model is in this rep…
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Hi, is there a way to extract the nnunet algorithm from the pipeline and train/run it without any of the extra components? In other words, I still want the nnunet pipeline to automatically generate th…
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I followed the instructions in https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/installation_instructions.md and cloned the repo locally and used `pip install -e .` but it only installs th…
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Hello @FabianIsensee,
Thank you for your work. This work has been instrumental in establishing a baseline for semantic segmentation.
The most recent version of nnunetv2 (`v2.5.1`) exhibits a multi…
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This problem came up from [this issue](https://github.com/bamf-health/aimi-kidney-ct/issues/8#issuecomment-2417869101) when I tried to run the bamf_nnunet_ct_kidney model on a ct scan from[ TCGA-KIRC]…
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The objective of this issue is to integrate the 3D nnunet model from this release: https://github.com/ivadomed/ms-lesion-agnostic/releases/tag/r20241101
The modifications will be done shortly in a …
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Dear Researcher,
I hope this message finds you well.
I am a research fellow at the University of Modena and Reggio Emilia, responsible for ensuring the reproducibility of code submitted for the …
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2024-09-27 03:28:32.231575: unpacking dataset...
2024-09-27 03:28:47.705576: unpacking done...
2024-09-27 03:28:47.745351: Unable to plot network architecture: nnUNet_compile is enabled!
2024-09-27…
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Hi team,
I'm training on brain lesion segmentation task. The lesions have various sizes, from 200mL. We first feed the small and large lesion data to the nnUNet, but the average dice is not good, e…