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The `*.nt.gz` RDF downloads served from HTTPS URLs (rather than FTP) seem to selectively return gzip compressed data and plain text.
Example URL at `https://nlmpubs.nlm.nih.gov/projects/mesh/rdf/20…
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Is there a way to subset an ontology by namespace. For example for the gene ontology (GO) if I'm only interested in the biological process namespace. Is there a way of creating a subontology that onl…
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Hi!
I'm using `networkx` for small dependency graphs, and I'm especially interested in the transitive_reduction algorithm. However, I noticed that all nodes lose their associated data after using t…
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I have an interest in obtaining a graph where I can choose to represent both subClassOf / is_a and other relations. For example, in the gene ontology I want to include the part_of, regulates, etc... r…
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Hey there,
thank you very much for already fixing the isolated roots and leaves issue for ontologies given as owl files, which took me some time on my own.
However, I have another issue with your …
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I want to import the gene ontology and the human phenotype ontology. Both give me some issues.
```python
from nxontology.imports import from_file
gene_ontology = from_file("http://purl.obolibra…
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Note that have a proposed JSON representation of OBO that would obviate the need for special purpose parsers. Your comments as a developer would be most welcome:
- https://github.com/geneontology/obog…
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Hi, I've got a package installation error. Could you please help to answer my question? Thanks.
My execute command line : "!pip install nxontology" in jupyter notebook.
Error report :
```
ERR…
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The most recent release is 1.5.0, which is missing 74 commits https://github.com/sagepublishing/rejected_article_tracker_pkg/compare/1.5.0...fc4f72de7b12c4acc6af597d61464ef7ed6e943b from the current m…
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Hey, is there a way to load OWL files into the graph? If not, are you aware of any roundabout that can help covert this OWL file into OBO as certain ontologies in OBO Foundry have links to just OWL fi…