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dhimmel
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obonet
OBO-formatted ontologies → networkx (Python 3)
https://github.com/dhimmel/obonet/blob/main/examples/go-obonet.ipynb
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Get version without deprecation warnings
#29
bgyori
closed
1 month ago
1
Add encoding parameter in read_obo function
#28
gtsitsiridis
closed
1 year ago
5
Adding support for encoding in read_obo / UnicodeDecodeError for Obonet0.3.1 (Cell Ontology)
#27
thomcsmits
closed
1 year ago
5
Handle case where no header is found
#26
cthoyt
closed
1 year ago
3
UnicodeDecodeError for obonet0.2.5
#25
ItWasLGS
closed
2 years ago
3
KeyError while reading OWL ontology
#24
marcomoretto
closed
2 years ago
1
Use of OWL files
#23
YojanaGadiya
closed
3 years ago
6
modernize repo infrastructure
#22
dhimmel
closed
3 years ago
0
Address duplicate name/ontology key issue
#21
cthoyt
closed
3 years ago
4
Parse failure when `name` key is used in ontology header
#20
cthoyt
closed
3 years ago
1
Getting a subgraph from obo file
#19
BSharmi
closed
2 years ago
8
Extract replaced_by mappings for obsolete terms
#18
csbayrak
closed
3 years ago
4
Save as an obo file
#17
MahboobehJannesari
closed
3 years ago
1
CI: modernize travis builds
#16
dhimmel
closed
3 years ago
0
Added ability to include nodes marked as obsolete
#15
torstees
closed
3 years ago
3
Fix test warnings on Python 3.7
#14
dhimmel
closed
5 years ago
0
Travis CI: test on Python 3.7
#13
dhimmel
closed
5 years ago
0
PyPI: relative links in README.md break in long_description
#12
colinkcurtis
closed
5 years ago
3
[documentation] Name not always supplied for nodes
#11
pseudomonas
closed
6 years ago
5
Bug: Can't load Brenda Tissue Ontology
#10
kalugny
closed
6 years ago
2
pip insall on windows raises a UnicodeDecodeError
#9
PetrovskYYY
closed
6 years ago
5
Default encoding for missing header
#8
arvkevi
closed
6 years ago
0
Networkx2 prep
#7
arvkevi
closed
6 years ago
2
Installation on python2 without pandoc
#6
cthoyt
closed
6 years ago
3
obonet says GO is not a DAG
#5
msinclair2
closed
6 years ago
3
Collaboration on obo parser and data model
#4
lyschoening
closed
2 years ago
9
Upload the package to PyPI
#3
azneto
closed
7 years ago
11
Consider using a JSON representation instead of the obo file format
#2
cmungall
closed
2 years ago
5
change location for obo spec
#1
cmungall
closed
7 years ago
1