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The spreadsheets are in the github. https://github.com/FAIRplus/WP3_FAIR_tooling/tool
the Gdrive versions are here https://drive.google.com/drive/u/2/folders/1l92AazXtBA1aUg-66utB3UKyY00MgLLH
I…
FuqiX updated
3 years ago
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go-basic.obo was supposed to be acyclic. However, the release from June 10, 2024 contains cyclic relationships.
When we removed part-of relationships between:
GO:0045258 and GO:0045282
GO:00452…
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mondo.obo is an odd beast. In general the .obo files for any OBO project are
1. isomorphic to the OWL
2. the OBO basic version
I much prefer 1, and having an explicit foo-basic ontology, with o…
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## Precondition: drone user knows that ontologies are a thing that exist
## Drone user problems:
- I want to use an ontology to make my data more reusable by other people
- I don’t know what on…
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What license should we use for the OSC-EM schemas?
There are three components here to keep separate:
- The **datasets** themselves, including data and OSCEM-format metadata files. This can be cust…
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**Is your request related to a specific disease? Please describe.**
No
**Describe the proposed change(s)**
Use a typo detector tool to fix typos across repo
**References**
N/A
I used the…
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Had a conversation with @matuskalas at 2 consecutive Galaxy CoFests about improving the search functionality of the [Galaxy Platform Directory](https://galaxyproject.org/use/). In between those two co…
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Wondering if it would be possible/useful to annotate OpenMS tools (and formats) with terms from an ontology like
- http://edamontology.org
- https://www.psidev.info/groups/controlled-vocabularies…
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Many developers have written redundant obo parsers in various languages. Due to the details of the spec it is difficult to write a robust parser. OWL is very difficult to work with, many people use th…
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## Description of the issue
From OEO dev meeting 82:
UO has short comings:
* not BFO conform
* units are defined without
* relations between different units are not axiomatised
## Ideas o…