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### Description of feature
The entrez IDs are super useful in RNASeq/enrichment analyses and would save us a lot of work if its done in the annotation step. This feature could help link our pipelines…
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As far as I know them....will be useful for linking metabolic pathways that cross mitochondrion/cytosol:
I will weed out the non transporters. Can confirm the ortholgies with fly.
Systematic ID …
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Hi @HajkD ,
I'm using the `orthologs` function with `ortho_detection = "RBH"` to detect orthologs for a `query_file` containing 8 protein fasta sequences in multiple `subject_files`.
For easier…
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Good starting review [The roles of assembly factors in mammalian mitoribosome biogenesis ](https://pubmed.ncbi.nlm.nih.gov/34339868/)
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Perhaps we could think about adding sub-heading in this list? It's getting a bit long.
Some ideas for headings:
- Gene lists
- Orthologs/paralogs
- Unstudied/understudied genes
- Other…
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Thanks for the very useful tool. This tool is trained in many scRNA datasets of human cells, so i am wondering whether it can be used for cell annotation of other species like monkey, mouse?
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Hello Florent,
The pipeline is going further but again I am afraid I have encountered a new error.
First, the topGO library was not installed in the Dockerhub build, I solved it by manually insta…
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PomBase have made curated associations to MONDO terms.
It would be useful to also load instead all MONDO associations to human proteins.
We could use this query to cross-check our associations by …
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For Release 76, Orthologs_HCOP.tar.gz was unzipped and untarred as a set of nested directories containing Orthologs_HCOP.
The full path is " target4/famlib/dev/PANTHER16.0/lib_16.0/ftp/Orthologs_HCOP…
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Orthologs/Paralog feature, orthomcl clustering of orthologs can be utilized to transfer annotation across organisms.
(a script tool using web services, but somehow automated)