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* **PTHR ID & PTN node:**
PTN000162283 (PTHR43380)
* **Sequences with problematic annotation (ID + gene/protein name):**
Human P12694 and orthologs
* **Type of Issue: Erroneous source or err…
sjm41 updated
2 months ago
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For Release 76, Orthologs_HCOP.tar.gz was unzipped and untarred as a set of nested directories containing Orthologs_HCOP.
The full path is " target4/famlib/dev/PANTHER16.0/lib_16.0/ftp/Orthologs_HCOP…
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PomBase have made curated associations to MONDO terms.
It would be useful to also load instead all MONDO associations to human proteins.
We could use this query to cross-check our associations by …
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```
Dear Authors,
OrthAgogue is a really useful software, specially in terms of its speed for
generating orthology relationships in large datasets. My compliments! I ran
OrthAgogue on a large datas…
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Orthologs/Paralog feature, orthomcl clustering of orthologs can be utilized to transfer annotation across organisms.
(a script tool using web services, but somehow automated)
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Hi,
I'm using the ksrates docker image. I have an issue with not getting relevant output files. Here are the codes I have run,
```
/usr/local/bin/ksrates init config_oxalis.txt
/usr/local/bin/ksra…
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Hello Florent,
The pipeline is going further but again I am afraid I have encountered a new error.
First, the topGO library was not installed in the Dockerhub build, I solved it by manually insta…
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New GO arrangement
iron-sulfur cluster assembly complex (GO:1990229)
|_cytosolic [4Fe-4S] assembly scaffold complex (GO:1904564)
|_cytosolic [4Fe-4S] assembly targeting complex (GO:0097361)
…
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Supply URLs for PomBase data sources.
for these
PomBase phenotypes https://www.pombase.org/downloads/phenotype-annotations
GO data. https://www.pombase.org/downloads/go-annotations
cerevisia…