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Hi, I user Shasta v0.11.1 to assemble a R10.4 dataset, the N50 of the assembly is only 3.4M, is this right? The dataset was download from s3://ont-open-data/giab_2023.05/analysis/hg002/sup/PAO83395.pa…
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Since `distutils` has been removed in Python 3.12, installing the package with it is no longer possible.
`distutils` has been deprecated since Python 3.10 and is superseded by `setuptools`. (See [P…
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Hi Brant!
I am wondering if there is a way to generate a file like the joined_allele_sequences_all_samples.fasta file using the new phasing workflow in 1.7.3. I would like to get alignments of phas…
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Hi,
The longphase has an option for co-phasing SNVs, and SVs and SNVs with called modifications.
The input for co-phasing is an unphased SNV.vcf, and didn't work with an already phased VCF when I tr…
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### Inquiry description
Hello,
Is there any Pset or Parameter for IFC Phasing?
Thank you in advance!
### Revit Version
2023.0.x
### IFC for Revit Addon Version
24.x.x
### Windows Version
…
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### Current Behaviour
Currently only tested in the worgen area. Quest Royal orders when clicked auto accepts the quest and gives you no additional quest text and no way to close it other than using e…
Evlie updated
10 months ago
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Hi there, does shapeit4 currently support phasing multiallelic variants (2 or more ALT alleles) or are only biallelic variants supported?
Many thanks.
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Hi,
I would like to understand the scope of the cookies covered in third-party cookie deprecation based on my testing with enabling the flag to test for breakage as described in https://developer.ch…
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Copying a comment from a discussion here
https://github.com/Mu2e/Offline/pull/379#issuecomment-803443585
I think StepPointMC is a bit of a mess because it is trying to cover too many use cases.
I…
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Is there anyway to perform haplotype phasing without imputation with Shapeit4? or imputation is necessary?
Thanks.
Shicheng