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**Mondo term (ID and Label)**
MONDO:0034099 'SYNGAP1-related developmental and epileptic encephalopathy'
**Reason for deprecation**
Orphanet cross-references OMIM:
INTELLECTUAL DEVELOPMENTAL DIS…
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As discussed with @ajacsherman et al. , we'd like to add support for matching names against phylogeny tips as published by:
Upham NS, Esselstyn JA, Jetz W. Inferring the mammal tree: Species-level …
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Here are some APIs that might be useful for finding links to open access full text articles. I've not yet found one that provides direct access except for Pubmed's full text API, which returns XML. ht…
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I'm noticing some blank lines in the output. These seem to be created by .software.json files that don't have any metadata or mentions?
I added the `.software.json` names to the output file for cr…
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especially between Wikidata on the one hand and PMID/PMCID/DOI/arXiv ID on the other
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Thank you for this package, maintainers!
I notice that `epmc_search` doesn't return some of the useful fields that are available in the API. I think it would would be valuable to return all fields…
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It would be great to put an example output into the README, including what (if anything) gets hyperlinked and how it deals with DOI / PMCID.
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Can you make the full dataset (including metadata files) public? Particularly providing PMID/PMCIDs for all PubMed files included in the dataset (PPR and PAR) would be very useful.
The current lin…
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command:
python run_indra_pmcids_biorecipe.py -i /Users/niloofararazkhani/Documents/BioRECIPE/examples/indra/Reading_indra.json -o /Users/niloofararazkhani/Documents/BioRECIPE/examples/interaction…
narzk updated
10 months ago
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Recommend ability to input multiple resolvable DOIs in project open data metadata. For example we mint DOIs (through DataCite) for our research datasets which is included under the file identifier fi…