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Introduction, first paragraph.
Saying that the likelihood of obtaining false positives increases with the amount of tests conducted might not be the most precise wording and might be confusing. I be…
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We are currently trying to validate our series 3 target. @danaklug has done some reading on target validation and we would love some feedback on the definition.
Our definition can be found [here](…
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# Problem
We have been instructed to accept submissions in annData files where gene expression quantifications have been generated by external groups and raw data are not available. We have no cont…
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Hello CompOmics team,
I am working on different proteomics datasets including both label-free and TMT experiments and I have several questions. After performing identification using SearchGUI with …
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Hi Phil,
I am starting to use PAW pipeline in my TMT studies. The transparency of the workflow and the flexibility is awesome! Although I am not acquainted with Python scripts, I think it is possible…
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Peptides FDRs do not correspond to protein FDRs.
Currently, large-scale studies often have dozens or hundreds of LC-MS runs that are being accumulated. Repeated measurements lead to an accumulation o…
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Create a section for each environment that helps a user transition to using the tool/environment in AnVIL
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/ANVIL-8…
kozbo updated
4 years ago
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Hi, great tool!
To make it even better, it would be nice to also support protein level result export to .txt/.tsv, as is implemented for the peptide level table.
at least pFind.protein cannot read…
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Hi,
How is the Q.Value in the report.tsv calculated?
I noticed across multiple experiments that the Q.Values have a strange distribution. For instance, I searched the "RD139_Narrow_UPS1_25fmol_inj…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Vitek-Lab/MSstatsBioNet
Confirm the following by …