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i completely do not understand why those file can not be processed. can you see this from the logfile?
this is tims tof data with very narrow widows 10Da
[log_2024-09-06_16-06-34.txt](https://github…
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Hi,
I was trying to analyse DDA runs with FAIMS and I got this error:
Process 'PhilosopherFilter' finished, exit code: 0
PhilosopherFilter [Work dir: D:\EV_EMT_project\FragPipe\WT_EV_4]
C:\P…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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- Describe the issue or question:
Using a large fasta database (with decoys) 8.4 GB fails. Running a smaller fasta database 1.7GB works fine (without slicing).
- Upload your log file
(If a log …
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the fragpipe doesnt see IonQuant version: 1.10.27...however its not visisble in the config.(see the photos)
it was ok till i started to load dia files..when i got back with dda it was no functional a…
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- Describe the issue or question:
Hello,
I'm trying to run a LFQ but I'm getting this error. Any suggestion?
- Upload your log file
(If a log file hasn't been generated, go to the 'Run' tab …
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**Describe the bug**
I use the TMT10 workflow with some slight changes in MSfragger setting. When it came to the final stage of validation, "PhilosopherFilter", it reports a new error saying that can…
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Hello, I recently used open search to find an unknown modification of 60 AA peptides. The sample was analyzed after processing, but the results showed: Process 'ProteinProphet' finished, exit code: 1
…
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- Describe the issue or question:
I recently updated the whole FragPipe workflow ( all tools updated for V21.0, 8jan 2024).
Standaard DDA search runs repeatedly into error message after PeptideProp…
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Fragpipe sometimes works, sometimes stops with "panic" and "this is a bug" statements. Also, apologies, but Chrome would not allow zip file upload, nor copy/paste of zip file. Original text of the end…