-
### What would you like to see added to PyNWB?
As mentioned in #1880, `get_data_in_units()` loads the entire dataset into memory. For large datasets, that is impractical and will silently blow up a u…
-
### What would you like to see added to HDMF-ZARR?
I'd like to be able to add data from an existing zarr store, with the same compression it used originally, in an efficient way.
As I understand i…
-
### What would you like to see added to PyNWB?
The current CLI syntax for pynwb validate according to the docs is:
```bash
python -m pynwb.validate test.nwb
```
I think it would be better i…
-
Approach below are not exclusive
## (1) Use namespace filepath returned by extension python package
```python
import ndx_my_extension
from pynwb import load_namespaces
load_namespaces(ndx…
-
pynwb validation of matnwb-generated files fails when an extension is in the cached namespace.
This is and independent issue from issue #349 and is not fixed by PR #350
To replicate:
```matlab
g…
-
Right now when external mode is chosen we have the starting frames as a requirement:
https://github.com/catalystneuro/neuroconv/blob/2da9f6bef30b46a52b3303d41eb6f80cf8cccffa/src/neuroconv/datainter…
-
@magland @rly we are working on the nwb-benchmarks and am encountering a strange issue https://github.com/NeurodataWithoutBorders/nwb_benchmarks/issues/57 Do you have an idea? It looks like this might…
-
After converting the original files (downloaded from cshl repo) to nwb, I ran the jupyter notebook, but there was no timestamps in
trial_seg_module.get('dFoF_firstSideTryAl').roi_response_series
…
-
As a quality control step, we should run the [pynwb validator](https://pynwb.readthedocs.io/en/stable/validation.html) when writing an NWB file with NWBIO.
Since this might be slow, we might need t…
-
### Describe the issue
`NWBFile.session_description` is a required dataset in the NWB schema. Going through the tutorial, this field is not set by default. During conversion, the `session_descripti…