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NeurodataWithoutBorders
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lindi
Linked Data Interface (LINDI) - cloud-friendly access to NWB data
BSD 3-Clause "New" or "Revised" License
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Temporary failure in name resolution
#81
vncntprvst
closed
3 weeks ago
7
Use zarr FSStore and fsspec ReferenceFileSystem
#80
rly
opened
1 month ago
1
Update README.md and examples
#79
magland
closed
1 month ago
2
Add multi-threading like in remfile
#78
rly
opened
1 month ago
5
Fix handling of datasets with shape (0,0,...)
#77
rly
closed
1 month ago
3
Data with shape (0,0,0) triggering assertion error after get chunk refactor
#76
rly
closed
1 month ago
0
Implement `LindiReferenceFileSystemStore.__contains__`
#75
rly
closed
1 month ago
3
Reading single chunk takes 10x longer than remfile
#74
rly
opened
1 month ago
5
[Idea] Experiment with indexing transcriptomics data on NeMO
#73
rly
opened
1 month ago
0
[Idea] Experiment with multipart range requests for slicing uncompressed source data
#72
rly
closed
1 month ago
4
Support links to datasets/arrays
#71
rly
closed
1 month ago
4
LINDI does not differentiate between datasets and links to datasets
#70
rly
closed
1 month ago
0
LocalCache: limit allowed blob size
#69
magland
closed
1 month ago
6
Use chunk_iter when adding chunk refs
#68
rly
closed
1 month ago
13
Use chunk_iter to avoid slow performance for files with many chunks
#67
rly
closed
1 month ago
2
Allow LindiH5pyFile.from_hdf5_file to accept remote URL for local file
#66
rly
closed
1 month ago
1
expand use of templates
#65
bendichter
closed
1 month ago
4
Update example urls to use new .nwb.lindi.json file extension
#64
magland
closed
1 month ago
1
Add generation metadata to .lindi.json file writing (6)
#63
magland
closed
1 month ago
4
catch chunk byte range error (5)
#62
magland
closed
1 month ago
2
Error running LINDI in a subproccess
#61
oruebel
opened
2 months ago
9
implement lindi.File, drop-in replacement for h5py.File that supports .lindi.json files based on extension (4)
#60
magland
closed
1 month ago
2
h5py monkey patch
#59
magland
closed
2 months ago
2
write to local lindi json file (3)
#57
magland
closed
1 month ago
3
Copy chunks to staging area (2)
#56
magland
closed
1 month ago
3
Support additional `create_dataset` kwargs
#55
rly
opened
2 months ago
0
implement LocalCache (1)
#54
magland
closed
1 month ago
7
figure out what to do about h5py dtype having metadata.vlen in order to get pynwb validator to work with Lindi
#53
magland
opened
2 months ago
0
remove case of LindiH5pyFile wrapping h5py.File
#52
magland
closed
2 months ago
1
implement templates for reference file system
#51
magland
closed
2 months ago
1
note to self: on_store_blob, etc should be on_upload_blob, etc
#50
magland
closed
2 months ago
0
implement templates for rfs
#49
magland
closed
2 months ago
1
Proposed simplification: remove support for wrapping h5py in LindiH5pyFile
#48
magland
closed
2 months ago
1
Add metadata to dtype when kind is 'O'
#47
magland
closed
2 months ago
1
WIP: expand test coverage
#46
magland
closed
2 months ago
1
allow unicode scalar
#45
magland
closed
2 months ago
1
implement chunks property
#44
magland
closed
2 months ago
1
Update README
#43
magland
closed
2 months ago
2
Implement staging store for preparing .nwb.json for upload to cloud
#42
magland
closed
2 months ago
11
add authors to pyproject.toml
#41
magland
closed
2 months ago
1
support dicts in reference file system for json files
#40
magland
closed
2 months ago
4
implement id for group/dataset as a string
#39
magland
closed
3 months ago
1
Consider making LindiH5pyFile a subclass of LindiH5pyGroup
#38
magland
opened
3 months ago
1
support track_order parameter when creating groups
#37
magland
opened
3 months ago
0
Resolve dataset of references
#36
rly
closed
3 months ago
1
Specify zarr codec when creating a dataset
#35
magland
closed
2 months ago
7
Working example: augment a DANDI NWB file and upload to cloud
#34
magland
closed
3 months ago
0
Example for changing metadata (e.g. subject id) in NWB file
#33
yarikoptic
closed
2 months ago
5
Pointers from our conversation
#32
yarikoptic
opened
3 months ago
1
Add github action to shellcheck main on push and PRs
#31
yarikoptic
closed
3 months ago
1
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