NeurodataWithoutBorders lindi issues

NeurodataWithoutBorders / lindi

Linked Data Interface (LINDI) - cloud-friendly access to NWB data

BSD 3-Clause "New" or "Revised" License

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issues

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help codespell ignore words

#100 magland closed 2 months ago
1
Expand tests to increase coverage

#99 magland closed 2 months ago
1
Consolidate and tidy examples

#98 magland closed 2 months ago
1
remove staging area functionality

#97 magland closed 2 months ago
5
Updates to README.md

#96 magland closed 2 months ago
1
Do not allow writing of complex datasets

#95 magland closed 2 months ago
1
Additional url resolver needed by dendro

#94 magland closed 2 months ago
2
Make pypi pre-release 0.4.0.a1

#93 magland closed 2 months ago
1
Support .lindi.d directory representation (in addition to .lindi.tar)

#92 magland closed 2 months ago
2
VirtualiZarr

#91 oruebel opened 3 months ago
2
Add example appending to NWB using LINDI and PyNWB

#90 rly closed 2 months ago
2
single binary lindi using tar

#89 magland closed 2 months ago
5
single file binary lindi

#88 magland closed 3 months ago
8
Add method to retrieve keys in LindiH5pyFile class

#87 magland closed 4 months ago
3
repr error

#86 bendichter opened 4 months ago
1
NWB search demo

#85 bendichter opened 4 months ago
3
Split large unchunked contiguous HDF5 datasets into smaller chunks

#84 magland closed 2 months ago
7
WIP: handle contiguous h5 dataset by splitting into chunks

#83 magland closed 4 months ago
0
WIP: add single_chunk_size_threshold opt

#82 magland closed 4 months ago
2
Temporary failure in name resolution

#81 vncntprvst closed 5 months ago
7
Use zarr FSStore and fsspec ReferenceFileSystem

#80 rly opened 5 months ago
1
Update README.md and examples

#79 magland closed 5 months ago
2
Add multi-threading like in remfile

#78 rly opened 6 months ago
5
Fix handling of datasets with shape (0,0,...)

#77 rly closed 6 months ago
3
Data with shape (0,0,0) triggering assertion error after get chunk refactor

#76 rly closed 6 months ago
0
Implement `LindiReferenceFileSystemStore.__contains__`

#75 rly closed 6 months ago
3
Reading single chunk takes 10x longer than remfile

#74 rly opened 6 months ago
5
[Idea] Experiment with indexing transcriptomics data on NeMO

#73 rly opened 6 months ago
0
[Idea] Experiment with multipart range requests for slicing uncompressed source data

#72 rly closed 6 months ago
4
Support links to datasets/arrays

#71 rly closed 6 months ago
4
LINDI does not differentiate between datasets and links to datasets

#70 rly closed 6 months ago
0
LocalCache: limit allowed blob size

#69 magland closed 6 months ago
6
Use chunk_iter when adding chunk refs

#68 rly closed 6 months ago
13
Use chunk_iter to avoid slow performance for files with many chunks

#67 rly closed 6 months ago
2
Allow LindiH5pyFile.from_hdf5_file to accept remote URL for local file

#66 rly closed 6 months ago
1
expand use of templates

#65 bendichter closed 6 months ago
4
Update example urls to use new .nwb.lindi.json file extension

#64 magland closed 6 months ago
1
Add generation metadata to .lindi.json file writing (6)

#63 magland closed 6 months ago
4
catch chunk byte range error (5)

#62 magland closed 6 months ago
2
Error running LINDI in a subproccess

#61 oruebel opened 7 months ago
9
implement lindi.File, drop-in replacement for h5py.File that supports .lindi.json files based on extension (4)

#60 magland closed 6 months ago
2
h5py monkey patch

#59 magland closed 7 months ago
2
write to local lindi json file (3)

#57 magland closed 6 months ago
3
Copy chunks to staging area (2)

#56 magland closed 6 months ago
3
Support additional `create_dataset` kwargs

#55 rly opened 7 months ago
0
implement LocalCache (1)

#54 magland closed 6 months ago
7
figure out what to do about h5py dtype having metadata.vlen in order to get pynwb validator to work with Lindi

#53 magland opened 7 months ago
0
remove case of LindiH5pyFile wrapping h5py.File

#52 magland closed 7 months ago
1
implement templates for reference file system

#51 magland closed 7 months ago
1
note to self: on_store_blob, etc should be on_upload_blob, etc

#50 magland closed 7 months ago
0