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Hey,
trying to correct some nanopore reads with illumina reads of the same sample.
Script died with a Python error due to a too long file name:
```
./HG-CoLoR -j 40 --maxorder 50 --longreads .…
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Hello. when I run haploclique-assembly, i get the output files (the latter 7 of which are 0 bytes):
consensus.fasta
statistics.txt
deletions.txt
alignment.prior
data_clique_to_reads.tsv
data_c…
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haplo-clique-assemble seems to complete, generating:
```
consensus.fasta
statistics.txt
deletions.txt
mean-sd
data_cliques_paired_R1.fastq
data_cliques_paired_R2.fastq
data_cliques_single.fast…
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I'm on it...
This is what I'm thinking. We need a high but narrow peak, and a wide but lower second peak. Maybe 10 bits, the first 3 bits are the high but narrow peak, where having only these bits tu…