cbg-ethz haploclique issues

cbg-ethz / haploclique

Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.

GNU General Public License v3.0

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issues

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Runtime for 10000x coverage

#64 Ruchank1 opened 2 years ago
0
Installation problem

#63 natasacirovic opened 2 years ago
2
Errors when reading Bam files [Conda container of haploclique]

#62 jblamyatifremer closed 5 years ago
10
adding a LICENSE.md file

#61 DrYak closed 6 years ago
0
license file missing

#60 bgruening closed 6 years ago
0
Development

#59 armintoepfer closed 6 years ago
0
Docopt

#58 armintoepfer closed 6 years ago
0
options handling change

#57 DrYak closed 6 years ago
3
modification to not allow any edge between reads with incompatible gap

#56 MaryamZaheri closed 6 years ago
0
fix std::unique_ptr

#55 DrYak closed 6 years ago
2
Tag a new release

#54 DrYak closed 6 years ago
8
Error: Unable to access jarfile /ConsensusFixer.jar

#53 zusman closed 6 years ago
1
7th CL for testing edgeBetween function

#52 MaryamZaheri closed 7 years ago
0
more test for edgeBetween function

#51 MaryamZaheri closed 7 years ago
0
test edgeBetween function, incompatible alignments

#50 MaryamZaheri closed 7 years ago
0
set boundary for qual char

#49 MaryamZaheri closed 7 years ago
1
This is the 1st CL to add limit_clique_size option to Haploclique.

#48 MaryamZaheri closed 7 years ago
1
Empty output files

#47 ruby-r closed 6 years ago
1
Doubt about an implementation detail in Haploclique

#46 shounak1990 opened 7 years ago
3
4th CL for readability improvement

#45 MaryamZaheri closed 7 years ago
0
3rd CL for readability improvement

#44 MaryamZaheri closed 7 years ago
0
Two short questions about haploclique capabilities ?

#43 jblamyatifremer closed 6 years ago
1
2nd CL for readability improvement, AligmentRecord class

#42 MaryamZaheri closed 7 years ago
0
test edgebetween function for dissimilar alignments

#41 MaryamZaheri closed 7 years ago
0
How set the number of threads?

#40 seoanezonjic closed 6 years ago
2
1st CL for readability improvement

#39 MaryamZaheri closed 7 years ago
11
What's new on 1.0 last release?

#38 seoanezonjic closed 6 years ago
8
fix output file names

#37 MaryamZaheri closed 7 years ago
0
Wrong output naming scheme

#36 armintoepfer closed 7 years ago
0
Create bioconda recipe for easy installation

#35 tobiasmarschall closed 6 years ago
2
install mac

#34 antoine4ucsd closed 7 years ago
12
More tests for edgeBetween function

#33 MaryamZaheri closed 7 years ago
0
Test for edgeBetween

#32 MaryamZaheri closed 7 years ago
0
fixing a bug and cleaning up the readBamFile

#31 MaryamZaheri closed 7 years ago
0
fixing a bug and cleaning up the readBamFile

#30 MaryamZaheri closed 7 years ago
0
new data for cram test

#29 MaryamZaheri closed 7 years ago
0
Development rebased

#28 armintoepfer closed 7 years ago
0
cmake and testing

#27 armintoepfer closed 7 years ago
0
cmake and testing

#26 armintoepfer closed 7 years ago
0
Development: test environment

#25 MaryamZaheri closed 7 years ago
1
git:// versus https:// in install-additional-software.sh

#24 daveuu closed 7 years ago
1
SAMTools commands changes cause [bam_sort] fails?

#23 daveuu closed 6 years ago
3
Modularize edge criteria and allow for arbitrary combinations

#22 tobiasmarschall opened 7 years ago
0
Update README.md

#21 armintoepfer closed 7 years ago
0
Use ninja

#20 armintoepfer closed 7 years ago
1
Only provide BAM output

#19 armintoepfer opened 7 years ago
3
Use original docopt

#18 armintoepfer opened 7 years ago
1
Delete bam-to-alignment-priors.cpp

#17 armintoepfer closed 7 years ago
2
Separate headers from source

#16 armintoepfer opened 7 years ago
0
Try different enumeration techniques

#15 armintoepfer opened 7 years ago
1