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There seem to be inconsistency in the patient sample "library size" between the value reported in the report header (at the top, next to the sample name) and the value plotted in the "Library size" vi…
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I am trying to use a Single Cell dataset from from one project to deconvolute a Bulk RNAseq dataset from a different project. When i run Squid I am getting an error when SQUOD.R is trying to create th…
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Need to come up with more ways to analyze RNAseq data. So far we have only used this data for QTL analysis and to correlate with measured phenotypes (GFR and ACR at 6,10, and 15 wks)
More ideas are …
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**Is your feature request related to a problem? Please describe.**
This is the list of Categories on Dockstore, though manual curation is slow:
```
COVID-19
Genomics Toolsets
Alignment
Assembly
Asso…
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I was running the test data in a cluster environment.
I had to extend the memory limit for counts_from_SALMON in tests/settings.yaml:
```
execution:
submit-to-cluster: yes
rules:
cou…
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### Describe your issue
I run GSEA() for a goat RNAseq differention analysis results.
the prepare code is follow:
```
genelogFC
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Hi,
I'm using STAR to do an RNAseq analysis on Staphylococcus aureus sRNA.
The aligment is working, but during the maping I have this Fatal error:
Transcriptome.cpp:18:Transcriptome: exiting b…
Mpvrd updated
3 months ago
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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
…
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@singha53 @santina
Hi,
Here https://github.com/STAT540-UBC/team_Bloodies/tree/master/Data/RNA-seq/Normal/
is a GSE87195_rnaseq_ensT_all.csv file for RNASeq count data from ~60000 transcripts of 1…
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In ACeDB, an expression-cluster is flagged as RNASeq, Tiling_array, Mass_spectrometry, even though the reference to the exact analysis or experiment is empty. In Datomic, it seems that we can no longe…