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The integrated terminal uses the defaults from the current system preferences (in my case, my .bashrc). This is great, but it does not fit to the background color coming from the RStudio color theme.
…
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Hi,
`derfinderPlot::plotCluster()` is currently failing https://bioconductor.org/checkResults/release/bioc-LATEST/derfinderPlot/nebbiolo2-buildsrc.html and I traced it back to `ggbio`. Here's a sma…
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Hello, while the theme looks amazing, it turns all options text into white color on white background.
Here is the screenshot:
![image](https://user-images.githubusercontent.com/13931593/94438357-0…
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## Description of the issue
The function _"recount::getTPM(rse)"_ returns the unexpected error message: _'Error: subscript contains invalid names'_.
Below, is a reproducible example that I have…
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Hi Aaron et al,
We (@Yalbibalderas @AnaBVA) noticed that the following code from OSCA returns different t-SNE plots. Eventually we narrowed down the issue to BioC 3.11 vs 3.12 (3.13 is the same as …
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Hi,
In my case, I ran into another error using the files from https://github.com/LieberInstitute/spatialLIBD/tree/RELEASE_3_14.
```bash
Rscript -e 'rmarkdown::render("spatialLIBD/vignettes/T…
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- os: Kubuntu 23.10
- `lsd --version`: lsd 1.1.2
- `echo $TERM`: xterm-256color
- `echo $LS_COLORS`: *.7z=38;5;40:*.WARC=38;5;40:*.a=38;5;40:*.arj=38;5;40:*.br=38;5;40:*.bz2=38;5;40:*.cpio=38;5;40:…
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## Prerequisites
- [x ] I have searched for similar issues in both open and closed tickets and cannot find a duplicate.
- [ x] The issue still exists against the latest stable version of Element…
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**Current Behavior (bug)**
Calling `devbox shell` should properly load the shell environment as documented. Packages and script should be available as well as the init hook should run.
**Expected …
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**If you are experiencing this issue, consider the workaround described below in comment https://github.com/rstudio/rstudio/issues/13007#issuecomment-2221210496.**
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### System details
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