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MarioniLab
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DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html
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read10xCounts Won't Import a Public Dataset
#112
DarioS
closed
1 month ago
2
deprecate beachmat::whichNonZero
#111
jonathangriffiths
closed
1 month ago
0
Compatibity with DelayedArray 0.31.7
#110
hpages
closed
1 month ago
4
emptyDropsCellRanger index out of bounds style error
#109
jamesnemesh
opened
3 months ago
1
hashedDrops not outputing the correct Best/Second
#108
zebasilio
closed
3 months ago
2
Is downsampleMatrix necessary before empty cells detection?
#107
tewengtong
closed
4 months ago
1
rowRanges Needs to be Manually Filled In
#106
DarioS
closed
7 months ago
2
Support for Droplet-Utils in Apple Silicon (ARM64)
#105
mari-ga
closed
8 months ago
3
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
#104
sitapriyamoorthi
closed
9 months ago
2
Added option to use gene symbols as row names
#103
lambdamoses
closed
10 months ago
2
How to get the cell naems of those get filtered (considered as empty droplets)
#102
grimwoo
closed
10 months ago
1
Argument to use gene symbols or Ensembl IDs as row names in read10xCounts
#101
lambdamoses
closed
10 months ago
3
DropletUtils (v1.10.3) install fails in R (v4.0.x); conda install works but package import fails
#100
cpantea
closed
1 year ago
4
Large peak near 1 when examining cell-calling diagnostics
#99
fluentin44
closed
1 year ago
4
as(<dgTMatrix>, "dgCMatrix") is deprecated
#98
lambdamoses
closed
1 year ago
7
read10xCounts error (help troubleshooting)
#97
france-hub
closed
1 year ago
2
wrong args for environment subassignment
#96
hugo-cornu-one-biosciences
closed
1 year ago
1
fix: fix bug in issue #94
#95
DongzeHE
closed
1 year ago
0
umi.min.frac.median Parameter bugs
#94
Liripo
closed
1 year ago
2
Using removeSwappedDrops for cellranger reanalysis output (without molecule_info.h5)
#93
ayumatsubo
closed
1 year ago
2
Add `known.empty` to `emptyDrops`, to facilitate cell calling on multi-modal data
#92
amcdavid
closed
1 year ago
1
Remove genes not detected in any cell barcode
#91
hongduosun
closed
2 years ago
4
Trouble installing package in fresh environment
#90
mrland99
closed
2 years ago
3
downsampleReads error
#89
harshini-c
closed
2 years ago
6
Add n.expected.cells estimation to emptyDropsCellRanger
#88
jashapiro
opened
2 years ago
4
Question about using which kinds of count in emptyDrops
#87
DongzeHE
closed
2 years ago
2
Usage between swappedDrops and chimericDrops ...
#86
drkoryjohns
opened
2 years ago
3
Aberant number of cells
#85
GregoireDS
closed
2 years ago
2
emptyDrops / over-calling cells?
#84
bbimber
closed
2 years ago
4
Installation error
#83
SaraJeanne08
closed
2 years ago
3
hashedDrops() throwing "Extraneous illegal arguments" error
#82
jdrnevich
closed
2 years ago
3
using read10xMolInfo (v1.14.0 for h5 files from v1.6.1
#81
chensujun
opened
2 years ago
5
use same FDR threshold as OSCA example
#80
alexvpickering
closed
2 years ago
0
More flexible support for extra columns in features csv.
#79
LTLA
closed
2 years ago
1
Make Jonny the maintainer
#78
LTLA
closed
2 years ago
1
read10xCounts doesn't work with StarSolo output
#77
raivivek
closed
2 years ago
7
Failing tests
#76
nileshpatra
opened
2 years ago
1
`hashedDrops()` returns incorrect indexing for `Best` and `Second` when hashes are not present
#75
RussBainer
closed
2 years ago
1
Cannot run ambientContribMaximum for y with multiple columns
#74
mgrantpeters
opened
2 years ago
1
Cannot convert to Seurat object
#73
dahun73
closed
2 years ago
2
improve documentation
#72
DongzeHE
closed
2 years ago
1
insufficient unique points for computing knee/inflection points
#71
Rohit-Satyam
opened
3 years ago
1
How to run barcodeSwapping and ChimericReads with no h5 info?
#70
mortunco
opened
3 years ago
1
write10xCounts converts NAs to 1e308
#69
jasminelmah
closed
3 years ago
2
complete emptyDropsCellRanger()
#68
DongzeHE
closed
3 years ago
0
emptyDrops BioC 3.11 vs 3.12: different results with the OSCA pbmc 4k dataset
#67
lcolladotor
opened
3 years ago
16
Further edits on the CellRanger-like emptyDrops
#66
LTLA
closed
2 years ago
7
Error with parallelization when running emptyDrops
#65
ycl6
closed
3 years ago
1
Create cellRangerLikeEmptyDrops.R
#64
DongzeHE
closed
3 years ago
8
Save attributes as UTF-8 variable-len scalar strings.
#63
LTLA
closed
3 years ago
1
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