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@sjy1203
EDA.ipynb
I tried running EDA.ipynb but getting this error 'ndc_rxnorm_file' is not defined. Upon further investigation I figured out there is a mismatch in file name. Please note that.
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As mentioned in this GitHub [issue](https://forums.ohdsi.org/t/what-is-an-atc-5th-level-code-for-combination-drugs-including-as-descendats/16732/1), we apparently have wrong assignments. Also check if…
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Use these scripts and adapt: https://code.google.com/p/swat-4-med-safety/source/browse/trunk/linkedSPLs/ChEBI-DrugBank-bio2rdf-mapping/README
Rich Boyce provided two tab delimited files containing ma…
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ACT Medication V4.1 Alpha
The entries for Paxlovid are not correct.
1) It's listed under N Preparations -> Nirmatrelvir and R Preparations -> Ritonavir with incorrect dosage for the RXNORM
https:…
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@stephanieshong wrote some helpful text for new RWD blurbs that may be better rolled into the main text of ch 3 as it is OMOP-focused:
"Harmonized EHR data is organized by key domains such as condi…
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Good morning - I'm brand new to the whole OMOP CDM ETL thing. I stumbled across Usagi and I was excited to get some help mapping our source code to concepts in the CDM. I installed Usagi and jumped …
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**Describe the problem in content or desired feature**
There are a number of deprecated concepts (invalid_reason U or D) in RxNorm and RxE that are related to other non-deprecated concepts. A simpl…
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I'm looking at mapping changes, for example
this [CPT Human Papillomavirus vaccine ... ](https://athena.ohdsi.org/search-terms/terms/2213435) was mapped to [CVX](https://athena.ohdsi.org/search-term…
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**Describe the problem in content or desired feature**
There are two entries for the ingredient deptropine in RxNorm Extensions
**How to find it**
Lookup deptropine in Athena
**Expected adjust…
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relationship_id = 'SPL - RxNorm' should not be hierarchical. Or maybe it should be aimed in the other direction,
for example here, https://athena.ohdsi.org/search-terms/terms/44340954,
the SPL conce…