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- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the master branch of openproblems.
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**Note**: Please read [this guide](https://m…
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Full reindex on DEV to test out the round 5 efficiency updates from Karl's changes, but encounter hundreds of such errors:
```
[2024-06-22 07:00:07] ERROR in es_writer:95: Failed to write doc of u…
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Here be the info:
## Preferred term label
Pseudo-bulk aggregation of single-cell ATAC-seq data
## Synonyms
pseudo-bulk ATAC-seq
## Textual definition
This involves combining (binary …
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https://mp.weixin.qq.com/s/km68J6grz8XflLFqs5hMEg
ixxmu updated
6 months ago
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Hi there,
Any ideas about whether ABC can be used with single-cell ATAC-seq data?
Best,
David Green
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Previously I was using scarches without issue on a CPU. Wanted to train a model on a GPU, and needed to install jaxlib. Everything stopped working after that, unable to import scarches. I then set up …
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Hi Alexander P. Wu,
I have some questions about reproducing results on the ICLR paper. 1), how to choose the iroot for each dataset in the construct_dag function. 2) File model.py Line:20-21 Should …
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I am running the below code;
```
%%time
data = snap.pp.import_data(
fragment_file,
chrom_sizes=snap.genome.hg38,
sorted_by_barcode=False,
)
data
```
And I am receiving the be…
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Matt Ruffalo has provided us a script (https://gist.github.com/mruffalo/bc35452b10df2410a8bb9e52abdf6271) to grab the various versions of pipelines given the hash of the `ingest-pipeline` git reposito…
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```r
sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server 7.9 (Maipo)
Matrix products: default
BLAS/LA…