theislab scarches issues

theislab / scarches

Reference mapping for single-cell genomics

https://docs.scarches.org/en/latest/

BSD 3-Clause "New" or "Revised" License

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issues

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add trvae Perturbation prediction notebook

#243 chelseabright96 opened 1 month ago
4
trvae Perturbation prediction notebook

#242 chelseabright96 closed 1 month ago
1
arm64 osx platform not supported?

#241 erzakiev opened 1 month ago
2
Fix gdrive link

#240 chelseabright96 closed 1 month ago
1
Can trVAE in scarches be applied to perturbation prediction?

#239 weizhiting opened 1 month ago
1
fix pbmc gdrive link

#238 chelseabright96 closed 1 month ago
1
Specify the number of cores

#237 tvegawaichman opened 1 month ago
0
Label transfer without any batch removal in the reference

#236 tvegawaichman opened 1 month ago
0
scGEN network.batch_removal error

#235 dKlee99 closed 1 month ago
1
AttributeError: module 'scanpy.neighbors' has no attribute 'compute_neighbors_umap'

#234 bitcometz opened 2 months ago
0
downgrade gdown to fix permissions error for pbmc_tutorial.h5ad

#233 chelseabright96 closed 1 month ago
1
Fix issue #224 / Improve handling of unlabled cells

#232 moinfar opened 3 months ago
0
PBMC data no longer available

#231 huananfshi opened 3 months ago
7
Add minification function for scPoli

#230 chelseabright96 opened 3 months ago
0
No module named 'jax.extend'

#229 dustin-mullaney closed 3 months ago
1
Issue with expimap model

#228 MoLuLuMo closed 4 months ago
1
Runtime error using scPoli - Tensors must have same number of dimensions: got 1 and 2

#227 lsw0825 closed 3 months ago
2
Issue in annotating cell types of unlabelled query data by scPoli

#226 xr-song opened 5 months ago
0
Choice of reference and query data sets

#225 hl-xue opened 5 months ago
1
scPoli Model for Unsupervised Use

#224 ShreyParikh07 opened 5 months ago
1
Allow pickling from GPU to CPU

#223 maarten-devries closed 6 months ago
1
More detailed training logs

#222 Nusob888 closed 6 months ago
2
Scpoli get latent

#221 chelseabright96 closed 6 months ago
1
scPoli usage

#220 Nusob888 closed 5 months ago
4
environment reproducibility

#219 racng closed 7 months ago
2
Speed improvement

#218 moinfar opened 8 months ago
2
Update of conda environment yaml

#217 wlason opened 8 months ago
0
the difference between scPoli and scANVI

#216 YawnC closed 5 months ago
1
Runtime error using scPoli - mat1 and mat2 must have the same dtype, but got Double and Float

#215 parkjosh-broadinstitute closed 8 months ago
7
Errors extracting embeddings

#214 itamarb-cgen closed 5 months ago
1
hlca_map_classify.ipynb missing early_stopping_kwarg

#213 c-westhoven opened 9 months ago
0
problems about scHPL training

#212 YawnC closed 9 months ago
13
ImportError: libcudnn.so.8: cannot open shared object file: No such file or directory

#211 jianrong0520 opened 10 months ago
2
cannot setup.py install

#210 jianrong0520 closed 8 months ago
3
scArches for PeakVI

#209 simozhou opened 10 months ago
1
Multiple categorical_covariate_keys not allowed

#208 Yuki-YqHuang opened 11 months ago
1
Perform scArches in R using Seurat

#207 ConDem94 opened 11 months ago
0
fail to use the sca.models.SCVI

#206 melancholy12 opened 11 months ago
7
fail to using scpoli for dataset training

#205 melancholy12 closed 11 months ago
2
Error: don't know how to restore data location of torch.storage.UntypedStorage while trying to load HLCA reference

#204 bapoorva closed 11 months ago
1
Fail to establish scpoli model

#203 melancholy12 closed 11 months ago
2
Fail to import scarches

#202 melancholy12 closed 11 months ago
2
fix typo - `condition_key` vs `condition_keys`

#201 maarten-devries closed 11 months ago
0
AssertionError: the erro occurs in preparing query feature naming (gene symbols) does not match the reference model feature naming (ensembl IDs )

#200 Niubile001 opened 11 months ago
0
multiVAE and organize_multiome_anndatas: module 'scarches.models' has no attribute

#199 Yansr3 opened 12 months ago
4
Potential bugs for label transfer

#198 shuailinli opened 1 year ago
1
Fail to get latent representation of reference + query dataset

#197 Yuki-YqHuang closed 11 months ago
1
scPoli dtype error

#196 JesperGrud closed 1 year ago
4
Scpoli：RuntimeError: expected scalar type Float but found Double

#195 melancholy12 closed 1 year ago
1
Install issue - no .yml in repo

#194 james-cranley closed 1 year ago
2