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theislab
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scarches
Reference mapping for single-cell genomics
https://docs.scarches.org/en/latest/
BSD 3-Clause "New" or "Revised" License
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fix typo - `condition_key` vs `condition_keys`
#201
maarten-devries
closed
1 year ago
0
AssertionError: the erro occurs in preparing query feature naming (gene symbols) does not match the reference model feature naming (ensembl IDs )
#200
Niubile001
opened
1 year ago
0
multiVAE and organize_multiome_anndatas: module 'scarches.models' has no attribute
#199
Yansr3
opened
1 year ago
4
Potential bugs for label transfer
#198
shuailinli
opened
1 year ago
1
Fail to get latent representation of reference + query dataset
#197
Yuki-YqHuang
closed
1 year ago
1
scPoli dtype error
#196
JesperGrud
closed
1 year ago
4
Scpoli:RuntimeError: expected scalar type Float but found Double
#195
melancholy12
closed
1 year ago
1
Install issue - no .yml in repo
#194
james-cranley
closed
1 year ago
2
TypeError: __init__() got an unexpected keyword argument 'condition_keys'
#193
yuxiaokang-source
closed
1 year ago
4
Update index.rst
#192
M0hammadL
closed
1 year ago
0
Mapping and label transfer tutorial rewriting
#191
LisaSikkema
closed
1 year ago
1
Scpoli/dev new
#190
cdedonno
closed
1 year ago
1
Revert "Revert "Scpoli/dev""
#189
M0hammadL
closed
1 year ago
2
Revert "Scpoli/dev"
#188
cdedonno
closed
1 year ago
1
Scpoli/dev
#187
cdedonno
closed
1 year ago
2
Can I ask you how to make reference dataset from multiple datasets from different tech?
#186
IronSpirit
opened
1 year ago
0
Which model should I use for a cell typing task
#185
abearab
closed
1 year ago
2
Documentation website failing to load
#184
virpatel524
closed
1 year ago
5
Label transfer code producing different outputs in different environments
#183
LisaSikkema
opened
1 year ago
10
ImportError: cannot import name 'setup_anndata' from 'scvi.data'
#182
besidesme
opened
1 year ago
2
Trouble with expimap -- float values wanted when anndata is in double
#181
virpatel524
closed
1 year ago
5
Error: Saved model does not contain original setup inputs.
#180
dsb66
closed
1 year ago
1
Have `_validate_var_names` support `csr_matrix`
#179
maarten-devries
closed
1 year ago
1
Update _utils.py
#178
maarten-devries
closed
1 year ago
1
Zero- and one-shot mapping
#177
alextopalova
opened
1 year ago
3
"Model was trained without prototypes" when using a loaded scPoli model
#176
maarten-devries
closed
1 year ago
8
Scpoli/partitioned embeddings
#175
cdedonno
closed
1 year ago
1
scpoli/atac
#174
cdedonno
closed
1 year ago
0
fix further device specifications
#173
cdedonno
closed
1 year ago
0
fix device bug
#172
cdedonno
closed
1 year ago
0
Include both gene IDs and gene symbols for check of feature correspondence between query and reference
#171
LisaSikkema
opened
1 year ago
0
scPoli get latent representations
#170
melancholy12
closed
1 year ago
2
Suggested improvements for label transfer function
#169
LisaSikkema
opened
1 year ago
1
scPoli: RuntimeError: indices should be either on cpu or on the same device as the indexed tensor (cpu)
#168
dannykwells
opened
1 year ago
22
WIP scpoli improvements
#167
cdedonno
closed
1 year ago
0
SageNet tutorial notebook missing one cell for model training
#166
sebastianbirk
opened
1 year ago
1
scPoli error of label transfer
#165
melancholy12
closed
1 year ago
7
HLCA notebook
#164
alextopalova
closed
1 year ago
1
add clarification on pretraining in demo
#163
cdedonno
closed
1 year ago
1
"get_num_classes" not available in newer torchmetrics versions
#162
NoahMottelson
opened
1 year ago
2
Matrix multiplication error in scpoli_model.classify
#161
mariemoullet
closed
1 year ago
13
For sergei
#160
MohammedZidane
opened
1 year ago
4
For sergei
#159
MohammedZidane
closed
1 year ago
1
fix pretraining epoch number and print progress
#158
cdedonno
closed
1 year ago
0
installation issue
#157
JiMouse
closed
1 year ago
1
add data link to scpoli demo
#156
cdedonno
closed
1 year ago
1
Correct the small typo
#155
dineshpalli
closed
1 year ago
2
scPoli sparse input? (TypeError: 'int' object is not callable)
#154
bobermayer
closed
1 year ago
1
CUDA error when running scPoli
#153
DzvinkaYarish
closed
1 year ago
2
BugFix in scPoli when input anndata has sparse X
#152
moinfar
closed
1 year ago
0
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