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theislab
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scarches
Reference mapping for single-cell genomics
https://docs.scarches.org/en/latest/
BSD 3-Clause "New" or "Revised" License
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[Usage Question] Handling Non-Matching Categorical Labels in scArches
#251
yojetsharma
opened
3 weeks ago
0
scPoli training progressively slower with increasing cell number when using raw counts
#250
gargerd
opened
4 weeks ago
2
TypeError: __init__() got an unexpected keyword argument 'n_epochs'
#249
gaoyifei1122
opened
1 month ago
2
Help in understanding condition_key and cell_type_key
#248
yojetsharma
opened
1 month ago
0
Python ver docs
#247
chelseabright96
opened
1 month ago
1
RuntimeError: mat1 and mat2 must have the same dtype, but got Double and Float
#246
alikigr
closed
2 months ago
0
RuntimeError: indices should be either on cpu or on the same device as the indexed tensor (cpu)
#245
jayshent
opened
2 months ago
0
Reproduction issue in treeArches
#244
hansen7
opened
2 months ago
0
add trvae Perturbation prediction notebook
#243
chelseabright96
closed
1 month ago
4
trvae Perturbation prediction notebook
#242
chelseabright96
closed
4 months ago
1
arm64 osx platform not supported?
#241
erzakiev
opened
4 months ago
2
Fix gdrive link
#240
chelseabright96
closed
4 months ago
1
Can trVAE in scarches be applied to perturbation prediction?
#239
weizhiting
closed
2 months ago
2
fix pbmc gdrive link
#238
chelseabright96
closed
4 months ago
1
Specify the number of cores
#237
tvegawaichman
opened
4 months ago
0
Label transfer without any batch removal in the reference
#236
tvegawaichman
opened
4 months ago
0
scGEN network.batch_removal error
#235
dKlee99
closed
4 months ago
1
AttributeError: module 'scanpy.neighbors' has no attribute 'compute_neighbors_umap'
#234
bitcometz
opened
5 months ago
0
downgrade gdown to fix permissions error for pbmc_tutorial.h5ad
#233
chelseabright96
closed
4 months ago
1
Fix issue #224 / Improve handling of unlabled cells
#232
moinfar
opened
6 months ago
0
PBMC data no longer available
#231
huananfshi
opened
6 months ago
7
Add minification function for scPoli
#230
chelseabright96
opened
6 months ago
0
No module named 'jax.extend'
#229
dustin-mullaney
closed
6 months ago
1
Issue with expimap model
#228
MoLuLuMo
closed
7 months ago
1
Runtime error using scPoli - Tensors must have same number of dimensions: got 1 and 2
#227
lsw0825
closed
6 months ago
2
Issue in annotating cell types of unlabelled query data by scPoli
#226
xr-song
opened
8 months ago
1
Choice of reference and query data sets
#225
hl-xue
opened
8 months ago
1
scPoli Model for Unsupervised Use
#224
ShreyParikh07
opened
8 months ago
1
Allow pickling from GPU to CPU
#223
maarten-devries
closed
9 months ago
1
More detailed training logs
#222
Nusob888
closed
9 months ago
2
Scpoli get latent
#221
chelseabright96
closed
9 months ago
1
scPoli usage
#220
Nusob888
closed
8 months ago
4
environment reproducibility
#219
racng
closed
10 months ago
2
Speed improvement
#218
moinfar
opened
11 months ago
2
Update of conda environment yaml
#217
wlason
opened
11 months ago
0
the difference between scPoli and scANVI
#216
YawnC
closed
8 months ago
1
Runtime error using scPoli - mat1 and mat2 must have the same dtype, but got Double and Float
#215
parkjosh-broadinstitute
closed
11 months ago
7
Errors extracting embeddings
#214
itamarb-cgen
closed
8 months ago
1
hlca_map_classify.ipynb missing early_stopping_kwarg
#213
c-westhoven
opened
12 months ago
0
problems about scHPL training
#212
YawnC
closed
1 year ago
13
ImportError: libcudnn.so.8: cannot open shared object file: No such file or directory
#211
jianrong0520
opened
1 year ago
2
cannot setup.py install
#210
jianrong0520
closed
11 months ago
7
scArches for PeakVI
#209
simozhou
opened
1 year ago
1
Multiple categorical_covariate_keys not allowed
#208
Yuki-YqHuang
opened
1 year ago
1
Perform scArches in R using Seurat
#207
ConDem94
opened
1 year ago
0
fail to use the sca.models.SCVI
#206
melancholy12
opened
1 year ago
7
fail to using scpoli for dataset training
#205
melancholy12
closed
1 year ago
2
Error: don't know how to restore data location of torch.storage.UntypedStorage while trying to load HLCA reference
#204
bapoorva
closed
1 year ago
1
Fail to establish scpoli model
#203
melancholy12
closed
1 year ago
2
Fail to import scarches
#202
melancholy12
closed
1 year ago
2
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