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Hi Cytospace team!
I have encountered some problems where the code stuck at this correlation = (v2.T.dot(v1) - sums / n) / stds / n, staying there for over 24 hours. Another issue is the concurrent…
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Good afternoon,
I am having issues with GDCPrepare with the CPTAC-3 dataset for scRNA-seq data.
I have successfully downloaded the data with
```
#Query the data
query.exp
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Hi! I have a huge 10X scRNA-seq mouse data (~60Gb BAM file | ~50K cells from 12 mice) that I am trying to run on cellSNP-lite. I compiled cellSNP-lite in an HPC environment and I am running it from th…
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Hi Salmon team
Are there plans afoot to support quantification of scRNA-seq data with unique molecular identifiers (UMIs)? UMIs are very commonly used in scRNA-seq data now, and correct quantificatio…
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I am working through the "Introduction to scRNA-seq integration" vignette and everything is running smoothly. My problem is that once I get to the "identify conserved cell type markers" section, the t…
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Hi,
I tried to run NMF for scRNA-seq.
res SetElements.bm -> SetMatrixElements
Timing stopped at: 46.79 184.2 231
Execution halted
it seems the format of input file is not correct.
Do yo…
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http://iregulon.aertslab.org/
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i analysis the scrna-seq of two conditions and used the DotPlot functions to show the average expression levels in different conditions. however, i found there is an opposite trend between the DotPlot…
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Can I use seq2HLA for cancer scRNA-seq data?