Irrationone cellassign issues

Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

Other

191 stars 79 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

install error

#106 Soleilcode opened 3 months ago
0
Error in tensorflow::install_tensorflow(extra_packages='tensorflow-probability', version = "2.1.0")

#105 martibonomi opened 5 months ago
0
Problem installing tensorflow-probability -- "no such option: --no-user"

#104 pvo93 opened 9 months ago
0
too much unassigned cells

#103 Romhop opened 11 months ago
0
cells should have non-zero library sizes or 'scaling' values

#102 Romhop opened 1 year ago
0
Error: ValueError: Tried to convert 'shape' to a tensor and failed. Error: Cannot convert a partially known TensorShape (1, ?) to a Tensor

#101 Alarabi1980 opened 1 year ago
2
module 'tensorflow' has no attribute 'reset_default_graph'

#100 keenhl opened 1 year ago
4
Update inference-tensorflow.R

#99 ChiaraCaprioli closed 1 year ago
1
TensorFlow Probability requires a newer version of TensorFlow than available via devtools

#98 ameekbhalla closed 1 year ago
1
fix tensor shape error

#97 sbwiecko opened 1 year ago
0
All cells from simulated matrix are assigned to one group with probability 1

#96 agalvezm opened 1 year ago
0
Are there any preconfigured `marker_gene_info` files?

#95 jolespin opened 2 years ago
0
Error in py_call_impl(callable, dots$args, dots$keywords) : ValueError: Tried to convert 'shape' to a tensor and failed.

#94 RuiyuRayWang closed 2 years ago
7
Error in py_module_import(module, convert = convert) :

#93 D13001788135 opened 2 years ago
1
Error: Cannot convert a partially known TensorShape to a Tensor: (1, ?)

#92 kmh005 opened 2 years ago
4
Gene cluster annotation scRNA-seq integrated data set

#91 cpolk3 opened 2 years ago
1
How this method performs compares to SingleR

#90 ShaowenJ opened 2 years ago
0
Size factor of CellAssign

#89 Bio-MingChen opened 3 years ago
1
The cpu resource exhausting

#88 honghh2018 opened 3 years ago
1
The tensorflow install in the location that i don't want to

#87 honghh2018 opened 3 years ago
0
output of marker_list_to_mat missing a lot of genes and cell types of the provided list

#86 moutazhelal opened 3 years ago
0
Error in detecting my system's architechture while installing Cellassign

#85 moutazhelal closed 3 years ago
0
conda package does not depend on python, tensorflow, tensorflow-probability

#84 aksarkar opened 3 years ago
0
problem installation with conda

#83 ERIGR closed 3 years ago
1
Implementation in scvi-tools

#82 adamgayoso closed 3 years ago
9
imbalanced marker lists

#81 kmh005 opened 3 years ago
2
Documentation workflow does not work with conda install

#80 keithgmitchell opened 3 years ago
2
Parallelization error

#79 petrsh closed 3 years ago
0
Failed "tensorflow::install_tensorflow()"

#78 levinhein opened 3 years ago
7
Number of genes provided in marker_gene_info should match number of genes in exprs_obj and be marker genes only

#77 evenDDDDD opened 3 years ago
3
identify cells negative for a certain marker

#76 aldojongejan opened 3 years ago
0
Installation failed

#75 Sa753 opened 3 years ago
2
Library cellassign aborted R session

#74 Drqyzhuang opened 4 years ago
0
Issue with running "Basic usage" example

#73 hyguo2 opened 4 years ago
0
Length(s) == nrow(Y) is not TRUE

#72 avln24 closed 4 years ago
4
Issue with running "Basic usage" example

#71 paula-tataru opened 4 years ago
0
Remove invalid chunk from introduction vignette

#70 rargelaguet opened 4 years ago
1
Reproducing Paper

#69 chanwkimlab opened 4 years ago
1
links to vignettes are broken

#68 mjhubisz opened 4 years ago
0
I keep getting Error in cellassign(exprs_obj = sub_sizefac, marker_gene_info = reorder_markersel, : nrow(rho) == G is not TRUE

#67 smk5g5 opened 4 years ago
2
Error: tensorflow/core/framework/cpu_allocator_impl.cc:81: Allocation of exceeds 10% of system memory

#66 rosshandler opened 4 years ago
5
version is too old on bioconda

#65 icanwinwyz closed 4 years ago
1
SizeFactors() does not add size factors to SingleCellObject

#64 tkapello opened 4 years ago
3
Installation issue

#63 hxy265 opened 4 years ago
9
How to perform cell-type assignments for clusters derived from unsupervised clustering?

#62 JingleW closed 4 years ago
1
example_marker_mat

#61 865699871 closed 4 years ago
2
Add thread option

#60 tfehlmann closed 4 years ago
1
CellAssign 99.16 Installation

#59 alyosama closed 4 years ago
3
cell with zero counts is assigned to a cell type

#58 olechnwin closed 4 years ago
2
length(s) == nrow(Y) is not TRUE

#57 olechnwin closed 4 years ago
1