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Irrationone
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cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
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Questions about parameters in cellassign function
#56
lxhuang7
closed
4 years ago
2
Proper setting of random seeds in cellassign
#55
kieranrcampbell
closed
4 years ago
0
Conda package.
#54
VicenteFR
closed
4 years ago
1
AttributeError: 'module' object has no attribute 'Num'
#53
DadongZ
closed
4 years ago
1
Cannot Install Cellassign
#52
aaliakmal
opened
4 years ago
23
Various updates: (i) add version to tensorflow install (ii) highlight…
#51
kieranrcampbell
closed
4 years ago
0
need more information on inputs to cellasssign
#50
olechnwin
closed
4 years ago
6
AttributeError: module 'tensorflow' has no attribute 'reset_default_graph'
#49
VicenteFR
closed
4 years ago
6
Problem to install cellassign using devtools.
#48
VicenteFR
closed
4 years ago
9
How to Constructing marker genes
#47
865699871
closed
4 years ago
1
Fix crappy nrow(rho) = G is not true error
#46
kieranrcampbell
closed
4 years ago
0
Problem to install cellassign in Rstudio
#45
key1356
opened
4 years ago
2
Error in cellassign(exprs_obj = sc_expriment, marker_gene_info = marker_gene_tab, : nrow(rho) == G is not TRUE
#44
jingxiao-chen
closed
4 years ago
1
celltypes
#43
865699871
closed
4 years ago
1
number of threads
#42
chenlingantelope
closed
4 years ago
1
runtime issue
#41
chenlingantelope
opened
4 years ago
7
Update vignettes in github pages
#40
kieranrcampbell
closed
4 years ago
0
Begin bioconductor changes
#39
kieranrcampbell
closed
4 years ago
0
How to assign cell population with t-SNE?
#38
jrnick7
closed
4 years ago
2
Basic usability enhancements
#37
kieranrcampbell
opened
5 years ago
0
Bioconductor submission?
#36
robertamezquita
opened
5 years ago
5
About results reproducibility
#35
RichardLZQ
closed
4 years ago
6
Wrong search path for tensorflow package
#34
jma1991
closed
4 years ago
6
Allow integer sce_assay
#33
LTLA
closed
5 years ago
1
Consider a training function to generate "marker_gene_info"
#32
LTLA
opened
5 years ago
0
Convergence fix
#31
Irrationone
closed
5 years ago
0
upper bound for qdiff in the event pass optimum
#30
nceglia
closed
5 years ago
1
Not find the "unassigned" category in results
#29
zhou-ran
closed
5 years ago
2
Write out cellassign results to SCE
#28
Irrationone
closed
5 years ago
0
Attempt to coerce Y/counts(Y) into matrix, instead of just dying
#27
Irrationone
closed
5 years ago
1
improvements for v0.99.1
#26
Irrationone
closed
5 years ago
0
removing known types
#25
nceglia
closed
5 years ago
0
Add more input validation
#24
Irrationone
closed
5 years ago
0
error when using raw count matrix as input
#23
ywang65
closed
5 years ago
2
Consider transposed input matrix
#22
kieranrcampbell
opened
5 years ago
0
Do something intelligent with non-present cell types
#21
kieranrcampbell
closed
5 years ago
1
Accept seurat as input
#20
kieranrcampbell
opened
5 years ago
1
Fix channels in conda install command
#19
johanneskoester
closed
5 years ago
1
Can we get a release?
#18
johanneskoester
closed
5 years ago
1
Use sizeFactors from SingleCellExperiment
#17
kieranrcampbell
opened
5 years ago
3
Change initialization of delta
#16
kieranrcampbell
opened
5 years ago
0
Different input format of rho
#15
kieranrcampbell
closed
5 years ago
1
Add in Travis build
#14
kieranrcampbell
closed
5 years ago
1
Add unit testing
#13
kieranrcampbell
closed
5 years ago
1
Pass R CMD check and BiocCheck for bioconductor
#12
kieranrcampbell
closed
5 years ago
2
Update readme
#11
kieranrcampbell
closed
5 years ago
1
Move over to tensorflow probability and work out how to install
#10
kieranrcampbell
closed
5 years ago
0
Flesh out vignette
#9
kieranrcampbell
closed
5 years ago
1
Intelligent subsetting of data
#8
kieranrcampbell
opened
5 years ago
3
Correct documentation for cellassign() function
#7
kieranrcampbell
closed
5 years ago
3
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