-
Data generator's with id `k` clash with telluirum's internal variables. For example, this data generator
```
k
```
```
```
gen…
-
After fixing issues with the [create_omex](https://github.com/robertvi/SBMLShowcase/blob/2c38d1abe0542196ed51e45f3e1f24b4c73e2e1e/utils/__init__.py#L44) function [#3](https://github.com/robertvi/SBMLS…
-
tellurium appears to have limits on the attributes that can be changed via `sedml:changeAttribute`. I'm guessing this applies to `computeChange.target`, `setValue.target`, and `variable.target` as wel…
-
### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
Tried the latest version of a biomodels OMEX file; got this error. Last time it was a SED-ML validation error,…
-
Frank's [SED-ML Web Tools](http://sysbioapps.dyndns.org/SED-ML_Web_Tools/) allow exporting COMBINE archives with results. When the SED-ML specifies a plot in the output, the archive contains a png. Wh…
0u812 updated
7 years ago
-
Presently, NEURON and PySCeS cannot be used together a single Python memory space, likely due to their shared dependency on SUNDIALS.
The Dockerfile below illustrates the problem. Building this res…
-
The attached Copasi file generate the attached SED-ML file. In the SED-ML, we have:
where 'ds_4_task3' doesn't have a label.
Is this an issue…
-
- [x] Add links as in foldout section of `pass / FAIL (R)` column
Amici, gillespy2, and vcell seem to pass while they do not really pass.
For **remote** runs:
- [x] in logs find "simulation fai…
-
-
To build both static and shared libraries properly each C++ module should be compiled twice - with and without ```-fPIC```. NuML doesn't compile anything without ```-fPIC```.
Then depending project…