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After I made a fresh installation of the IvSPythonRepository and the corresponding Conda environment, I get a Python `TypeError` when running the following code:
```
>>>from ivs.timeseries.freqana…
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After having merged some gds files I am getting an error with seqGDS2VCF due to seqSummary()
This stems from the .summary_filter() function were the attributes of the merged gds seems to somehow get …
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It appears that neither the Python pipeline nor the CWL have arguments to change autosome_only. Therefore it is effectively hardcoded in the R script to True. When chrX is run on in the pipeline, it u…
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We are getting an error when our sample size goes above 50,000. The PC-AIR step results in just NAs for all the PCS. At 45k samples, it runs fine. Originally reported this issue to GENESIS (https://g…
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Currently `ldshrink` assumes the input genotype/haplotype data are stored in an [n-by-p numerical matrix](https://github.com/stephenslab/ldshrink/blob/901d911677c858590ae88374fe3323535a60550a/R/LDshri…
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Hi team,
I ran into a very unusual bug where calling `correctK2()` drops rows when called in a specific instance. I have an implementation based on your [analysis pipeline](https://github.com/UW-GA…
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Hi all. I am trying to import data from a VCF produced by GATK Haplotypecaller. The VarientExperiment constructor fails from both VCF or GDS. Reproduced with the GDS:
```R
ve = VariantExperiment::…
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I tried running `BiocManager::install()` to upgrading my packages library with the new 3.11 container. Packages updated except for `BiocVersion`, which is on `site-library`, due to insufficient permis…