issues
search
stephenslab
/
ldshrink
ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
11
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Segmentation Fault when merging ldm files with GCTB
#35
alexisregelson
closed
1 year ago
1
LD shrinkage based on Ledoit-Wolf estimator (JMA, 2004)
#34
xiangzhu
opened
3 years ago
0
One question on the "theta shrinkage"
#33
privefl
closed
3 years ago
12
Set threshold in Wen-Stephens shrinkage estimator
#32
xiangzhu
opened
4 years ago
0
Use `data.table` package to parse vcf
#31
xiangzhu
opened
5 years ago
5
LD shrinkage in Zou et al (Hum Hered. 2010)
#30
xiangzhu
opened
5 years ago
0
LD shrinkage estimation in GCTB
#29
xiangzhu
opened
5 years ago
0
MHC region exclusion
#28
xiangzhu
opened
5 years ago
0
How to use this package?
#27
biostat0903
opened
5 years ago
6
Revise vignettes based on Wickham book
#26
xiangzhu
opened
5 years ago
0
Revise object documentation based on Wickham book
#25
xiangzhu
opened
5 years ago
0
Revise package metadata based on Wickham book
#24
xiangzhu
opened
5 years ago
0
Warnings from package installation
#23
pcarbo
opened
6 years ago
0
Revise R codes based on Wickham book
#22
xiangzhu
opened
6 years ago
2
Rcpp error: no matching function for call to 'R_useDynamicSymbols', shown in macOS 10.14 + R 3.5.1
#21
xiangzhu
closed
5 years ago
12
Name the package
#20
xiangzhu
closed
5 years ago
5
Confirm that EVs are actually real numbers
#19
xiangzhu
opened
6 years ago
0
Document the interpolation of genetic maps
#18
xiangzhu
opened
6 years ago
0
Interface to export LD matrix for requested region
#17
gaow
opened
6 years ago
2
Simple visualization of LD matrix
#16
xiangzhu
opened
6 years ago
0
Option to output traditional LD statistics
#15
xiangzhu
opened
6 years ago
0
Long-range regions of high LD
#14
xiangzhu
opened
6 years ago
0
External sources of genetic maps
#13
xiangzhu
opened
6 years ago
1
L2-penalty LD shrinkage
#12
xiangzhu
opened
6 years ago
0
Distance-based LD shrinkage
#11
xiangzhu
opened
6 years ago
0
Return SNP info along with LD matrix
#10
xiangzhu
opened
6 years ago
2
LD score calculation
#9
xiangzhu
opened
6 years ago
1
Possible ways of exploiting the structure of LD matrix
#8
xiangzhu
closed
5 years ago
2
C++17 requirement is limiting
#7
pcarbo
closed
6 years ago
1
Rename `haplo_panel`
#6
xiangzhu
opened
6 years ago
0
Allow people to use a faster `cov()`
#5
xiangzhu
closed
6 years ago
1
Make sure that `map_data`, `m` and `Ne` are consistent
#4
xiangzhu
opened
6 years ago
0
Including external data
#3
xiangzhu
opened
6 years ago
3
Possibly unnecessary use of `scale()`
#2
xiangzhu
closed
6 years ago
1
2018-06-14 meeting agenda
#1
xiangzhu
opened
6 years ago
4