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If I am using subplots to plot multiple sequences, is it possible to offset the plot in the x-axis? Then I can align parts of the plot that belong together.
I've tried changing first_index, modifyi…
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The GEN1 paper mentions that the training set consists of 1460 sequences, but after extracting the compressed files I downloaded from the official website, it seems there are only 1459 sequences. Each…
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**Description:**
The ANSI escape sequence `[38;5;246m[3m` is not being processed correctly, resulting in incorrect text formatting.
**Expected behavior:**
The sequence should change the text …
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Hello @motdotla and thank you for creating dotenv nodejs library 👍
## Feature Request
Could dotenv nodejs library support escape sequences (e.g `\" \t`) ?
At the minimum can it be aligned w…
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Some specs require filtering with a predicate on a sequence, and it is hard to express these in Cryptol. There are various workarounds for this, but they are all a bit hacky, and even worse sometime…
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Request to improve control over inter-eventblock-distances.
In #104 event sequences are added to UnfoldSim. These are implemented expressed as for example {SR}-blocks, such that in this case an S e…
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- some models output the wrong EOS token, so this is important
- special tokens show up as blank in output because we use llama_token_to_piece with special=False, so they aren't even considered for ou…
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Hello,
Is it possible to use hyphy to simulate sequences at the tips of a phylogenetic tree? I have a tree, and omega values for each branch of the tree - is it possible to use these branch specifi…
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When we specify multiple assemblies with `getset`, agc seems to buffer all the output in memory. If we pipe the agc output to another program (e.g. ropebwt3) that consumes the output slowly, agc will …
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MaveDB allows users to specify accession numbers from major genomic databases (Ensembl, RefSeq, UniProt) when depositing a target sequence. As we develop a validation framework for these accession num…