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Time: March 26th (12 noon UK) [Timezones](https://www.timeanddate.com/worldclock/meetingdetails.html?year=2024&month=3&day=26&hour=8&min=0&sec=0&p1=43&p2=136&p3=37&p4=771&p5=235&p6=152&p7=770&p8=250&p…
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Of the issues that pop up with KG2, a significant percentage of them seem to be `multi_ont_to_json_kg.py` related. While it it great that we can perform these imports with relatively minimal source-sp…
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I ran the following cleaning pipeline on the `GNPS_LIBRARY.mgf` (from https://gnps-external.ucsd.edu/gnpslibrary).
```python
results_folder = "./results_repairing_no_removing"
os.makedirs(results…
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Time: Oct 31st (12 noon UK, 1pm EU, 9pm Aus, 8am EDT)
The Outlook invite can be found [here](https://github.com/OpenSourceMycetoma/Series-1-Fenarimols/files/9674081/Monthly.MycetOS.meeting00.zip)
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siderophore transmembrane transporter activity (GO:0015343)
Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: siderophore-iron(out) + H…
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placeholder ticket to go through remaining issues with siderophore terms
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Dear Lucas,
I read your paper 'Biosynthetic potential of the global ocean microbiome'. I noted that you calculated the biosynthetic diversity (Shannon index based on natural product types) of each…
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Need to create new terms for abnormal, decreased, and increased lipocalin 2 levels as well as their corresponding circulating child terms.
abnormal lipocalin 2 level (a child of abnormal protein le…
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**Is your feature request related to a problem? Please describe.**
I ran antiSMASH on my dataset for the first time and noticed there weren't any tables generated just gbk and html files.
**Des…
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GO:1901171 naphthalene biosynthetic process
Definition
The chemical reactions and pathways resulting in the formation of naphthalene.
but
GO:0018931 naphthalene metabolic process
Defini…