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I'm trying to run slamdunk on fastq files in a directory. I'm running it locally in an anaconda environment.
I'm getting an error about index files being missing from both the map and filter folde…
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Hi Tobias,
Two questions:
1. I guess that there is no option for paired-end alignment, and I should use other aligners and use their BAM files as SLAM-dunk input?
2. Can you explain the output of …
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I get the following error when running the count dunk (all previous dunks successfully completed):
(slammer2) jonwruffin@DESKTOP-DGJU5CE:/mnt/e/slamseq_run_9_9_2021$ slamdunk count -o /mnt/e/slamse…
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Hello,
Another unrelated question - slamdunk by default seems to trim 12bp from the 5' end of the read - what is the purpose of this step? Is it related to read quality, or something more specific …
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Hi,
I have installed Slamdunk using conda, as per the instructions. Although I am unable to run the slamdunk all command. Please find the commands and the traceback below
conda activate myslamdu…
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Hi slamdunk developers,
I'm new to SLAMseq seq analysis and was wondering how should I generate a proper 3'UTR file for the analysis. I tried with the UCSC table browser (mm10) to download 3'UTR an…
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Hi Tobias,
thank you for this great tool and the detailed documentation!
To find out which parameters fit best to my analysis, I started to reanalyze some data to understand which parameters we…
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## New feature
Hi! Thanks for using Nextflow and submitting the proposal
for a new feature or the enhancement of an existing functionality.
Please replace this text providing a short descript…
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https://mp.weixin.qq.com/s/TXO7Z9bxxhUhhox1VwA_LA
ixxmu updated
2 years ago
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We need to go through the the [v1.10.1 sync log](https://github.com/nf-core/tools/runs/929290398?check_suite_focus=true) and see what to fix / improve.
Final summary:
```
INFO Finished. S…
ewels updated
3 years ago