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**Snakemake version**
8.13
**Describe the bug**
I'm using the `slurm` executor plugin to have Snakemake submit jobs to cluster on my behalf. In addition to this, I'm also using the `fs` plugi…
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Template https://github.com/bluebanquise/bluebanquise/blob/master/collections/hpc/roles/slurm/templates/slurmdbd.conf.j2 does not work well when slurm database is on another host from where slurmdbd …
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Dear snparcher developers,
I encounter errors when I run the pipeline on real size datasets.
I get this kind of message during bam2gvcf, gvcf2DB, DB2vcf or concat_gvcfs.
```
Error in rule DB2…
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Dear Columnflow Developers,
I am trying to run the [hh2bbtautau](https://github.com/uhh-cms/hh2bbtautau) analysis using a slurm scheduler that connects to a cluster at my institute. When running …
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Using latest version as of May 15. SHA code ending in 78a9c.
During the slurm deployment an error message prints out:
ERROR:root:No token file found. Also make sure that a [prod] section with a…
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`sbatch` has a handy `--comment` that allows adding metadata to jobs:
```sh
sbatch -h | grep comment
--comment=name arbitrary comment
```
i'd like to use this to connect my slu…
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goal:
- make slurm modules easier to maintain and load
- use consistent file names for logs
- make it flexible for running jobs on OSSC and bare-metal snellius (what is the best way to find out whe…
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Hi, it will be really great if you can add SLURM support, or at least add a doc that shows how to run accelerate with multiple nodes on SLURM. I saw that there are several issues that involve people t…
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```
(python3_maui) baes@maui02: /nesi/nobackup/nesi00213/RunFolder/Cybershake/v24p6$ python $gmsim/workflow/workflow/automation/install_scripts/install_cybershake.py . list_crustal.txt 20.4.1.2_cs200…
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The `nextflow.config` includes: `process.clusterOptions = '-S /bin/bash'`, but this throws the following error when run with `-process.executor slurm`:
```console
sbatch: error: Invalid numeric va…