ucagenomix sicelore-2.1 issues

ucagenomix / sicelore-2.1

MIT License

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issues

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process.clusterOptions incompatible with slurm

#22 nick-youngblut opened 1 month ago
1
conda environment for nextflow pipeline

#21 nick-youngblut opened 1 month ago
2
Setting the config.xml for the nextflow pipeline

#20 nick-youngblut opened 1 month ago
0
No ValidSAMrecords when using step4 optionA

#19 yuanwsy opened 5 months ago
10
Error when adding read sequences/QV into barcoded bam files (Step 4.b.1)

#18 pedrolmoura opened 7 months ago
0
How sicelore handles sencondary alignment

#17 xuzhougeng opened 7 months ago
0
java.lang.InterruptedException

#16 xuzhougeng closed 7 months ago
1
HELLP!!!! BETA VERSION HAS EXPIRED 2023-10-10 Get a new copy before

#15 Tycooner opened 8 months ago
1
Adapting to Split-seq (Parse Biosciences)

#14 kwglam opened 9 months ago
2
Config settings to report possible UMI within each read

#13 theheking closed 9 months ago
0
Recommendations for 10X 5' v1 Library

#12 mcortes-lopez opened 9 months ago
0
unexpected high number of barcodes

#11 Tijs-dot opened 12 months ago
0
Illegal argument value: Positional arguments were provided ',barcodes.csv}' but no positional argument is defined for this tool.

#10 Tijs-dot closed 11 months ago
2
NanoporeBC_UMI_Finder processes incorrect number of reads

#9 jindalk opened 1 year ago
3
tagbamwithreads is stuck

#8 reJELIN opened 1 year ago
13
java.lang.IllegalArgumentException in step3

#7 yuchen345 opened 1 year ago
9
Hung when running NanoporeBC_UMI_finder-2.1.jar assignumis

#6 kwglam opened 1 year ago
8
No valid SAMrecords in FusionDetector

#5 areebapatel closed 1 year ago
2
java.util.concurrent.CancellationException in step3

#4 yuntianf opened 1 year ago
13
SelectValidCellBarcode discards lot's of cell barcode

#3 yuntianf closed 1 year ago
3
Get stuck in step 1

#2 yuntianf closed 1 year ago
5
java.lang.NumberFormatException in SelectValidCellBarcode

#1 yuntianf closed 1 year ago
4