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**Software Versions**
Snakemake 8.16.0
snakemake-executor-plugin-slurm 0.9.0
slurm 23.11.7
**Describe the bug**
I have recently moved to Snakemake v8.16 and have been trying to execute…
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If you have an active AWS support contract, please open a case with AWS Premium Support team using the below documentation to report the issue:
https://docs.aws.amazon.com/awssupport/latest/user/case…
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The latest release of slurm apparently supports a single unique job ID across a federated cluster. For the moment though, if you submit a job to slurm on host X with `#SBATCH --clusters=Y` to make it…
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Hi,
Not an issue, more of a feature request.
I just wondered if there was any appetite to make this also work against a DB and not a slurm install. So then it can be run against a dump of a DB f…
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In my hybrid runs on Virgo the sampler crashes sometimes. @NGoetz told me that the problem is due to different CPUs of the nodes (intel vs. amd) of the cluster. If the processor of the node used to co…
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You need to change line 108 of src/miniwdl_slurm/__init__.py as you are using the wrong slurm command line flag
Current value:
srun_args.extend(["--cpus-per-task", str(cpu)])
Change to:
srun_a…
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Hi everyone, I'm struggling with creating a playbook that would install both control and execution nodes.
Whatever I do, I end up with multiple nodes where each of them is a singleton cluster with si…
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I just did a new install of CLAW (and required other packages), and I'm getting an error trying to run the example:
```
#snakemake --profile profiles/slurm --use-conda --keep-going
snakemake: e…
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We should test out [Dask Gateway](https://gateway.dask.org) on SLURM systems. It has supports for [HPC systems running SLURM](https://gateway.dask.org/install-jobqueue.html) and it can potentially all…
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https://scicomp.ethz.ch/wiki/Transition_from_LSF_to_Slurm