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snakemake
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snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
MIT License
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13
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chore(main): release 0.7.0
#108
github-actions[bot]
closed
1 week ago
1
chore(main): release 0.7.0
#107
github-actions[bot]
closed
1 week ago
0
Select partition automatically
#106
SilasK
opened
1 week ago
13
Log file and comment string are not escaped
#105
denisalevi
opened
1 week ago
0
sbatch: error: Batch job submission failed: Invalid feature specification
#104
Luke-ebbis
closed
2 weeks ago
2
Invalid --distribution specification?
#103
brantfaircloth
closed
3 weeks ago
12
chore(main): release 0.6.1
#102
github-actions[bot]
closed
3 weeks ago
0
chore(main): release 0.6.1
#101
github-actions[bot]
closed
3 weeks ago
0
chore(main): release 0.6.0
#100
github-actions[bot]
closed
3 weeks ago
1
chore(main): release 0.5.2
#99
github-actions[bot]
closed
4 weeks ago
1
fix: #97 preventing node confinment
#98
cmeesters
closed
4 weeks ago
1
Batch job submission failed: Node count specification invalid
#97
KB1RD
closed
3 weeks ago
5
Installing with mamba tries to downgrades to snakemake 7
#96
conchoecia
opened
1 month ago
3
Separately logging stdout and stderr
#95
bentyeh
opened
1 month ago
6
option to set the log directory?
#94
jbloom
opened
1 month ago
3
feat: will reject jobs, which attempt setting job names by 'slurm_extra'
#93
cmeesters
closed
3 weeks ago
2
chore(main): release 0.5.1
#92
github-actions[bot]
closed
1 month ago
1
Unsuccessful attempt to use "srun" after job submission leads to abort of jobs
#91
Robin1em
closed
1 month ago
5
Prevent job name overwrite by users
#90
cmeesters
opened
1 month ago
0
chore(main): release 0.5.0
#89
github-actions[bot]
closed
1 month ago
1
feat: wildcards in comment string #85
#88
mrvollger
closed
1 month ago
0
fix: proper line ending status message
#87
cmeesters
closed
1 month ago
0
fix: allowing for accounts containing whitespace
#86
cmeesters
closed
1 month ago
2
Wildcards missing from comments
#85
mrvollger
closed
1 month ago
4
SLURM logs path are unreasonably long and contains all wildcards
#84
xapple
closed
1 month ago
1
All SLURM jobs created by snakemake have the same name
#83
xapple
closed
1 month ago
3
Missing period or newline in status message when a SLURM job returns a failed status
#82
xapple
closed
1 month ago
1
fix: null byte account guess
#81
cmeesters
closed
1 week ago
2
docs: storage update
#80
cmeesters
closed
3 weeks ago
0
docs: added paragraphs about dynamic resource allocation
#79
cmeesters
closed
3 weeks ago
0
feat: warning if run in job
#78
cmeesters
closed
1 week ago
3
Slurm executor plugin is not found after installation
#77
vsbuffalo
closed
2 months ago
3
Make the `slurm_account` parameter optional, because it is in fact optional.
#76
xapple
closed
2 months ago
7
Setting memory twice when submitting with slurm executor
#75
kwells4
opened
2 months ago
14
chore(main): release 0.4.5
#74
github-actions[bot]
closed
2 months ago
1
How to set CommonSettings from command line?
#73
choosehappy
opened
2 months ago
1
fix: fix path typo
#72
fgvieira
closed
2 months ago
0
chore(main): release 0.4.4
#71
github-actions[bot]
closed
2 months ago
1
Revert "chore: updated testcase with directory path in wildcards"
#70
johanneskoester
closed
2 months ago
0
chore: updated testcase with directory path in wildcards
#69
johanneskoester
closed
2 months ago
0
chore(main): release 0.4.3
#68
github-actions[bot]
closed
2 months ago
1
fix: always create logdir before sbatch
#67
johanneskoester
closed
2 months ago
1
refactor: get cpus_per_task from jobstep executor
#66
johanneskoester
closed
2 months ago
3
Determine dynamic resources depending on retry reason?
#65
nikostr
opened
2 months ago
3
fix: fixed string for constraints - see issue #58
#64
cmeesters
opened
2 months ago
2
"module command not found" using Snakemake with Slurm
#63
kevinrue
closed
2 months ago
15
Dynamic runtime resource fails with SLURM
#62
nikostr
opened
2 months ago
3
Dynamic determination of queue
#61
johanneskoester
opened
2 months ago
2
Incorrect DAG evaluation in jobstep with ruleorder and checkpoint
#60
cademirch
closed
2 months ago
8
fix: ensuring setting of job.resources.cpus_per_task
#59
cmeesters
closed
2 months ago
0
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