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```
What steps will reproduce the problem?
1. I'm trying to align Solid PE 50/35bp to hg19 masked with snp132
2.
3.
What is the expected output? What do you see instead?
----------------------------…
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The running time of Linculst in the threshold between 50% to 90% is normally the same. But why does Linclust‘s running time in the threshold 90% to 100% range gradually increase? The run time at 100% …
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When trying MosaikAligner version 2.2.30 on my dataset and on the /demo the following error appears at read alignment and Mosaik exit:
./Build.sh
./Align.sh
Hashing reference sequence:
100%[=======…
MaJan updated
9 years ago
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**Background**: In order to trace Shakespearean Intertextuality, I am tokenizing Shakespeare texts (hypotexts) as 9grams and align each ngram (align_local) with other texts, e.g. by Terry Pratchett or…
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Hello Team,
several questions related to omh and edit distance:
1. For edit distance in the edlib (https://github.com/Martinsos/edlib), there can be global, infix and prefix method (e.g., gaps op…
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```
What steps will reproduce the problem?
1. ./MosaikBuild -fr test.fa -oa test.dat
2. ./MosaikBuild -fr query2.fa -st illumina -assignQual 99 -out read2.mkb
3. ./MosaikAligner -in read2.mkb -ia tes…
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```
What steps will reproduce the problem?
1. ./MosaikBuild -fr test.fa -oa test.dat
2. ./MosaikBuild -fr query2.fa -st illumina -assignQual 99 -out read2.mkb
3. ./MosaikAligner -in read2.mkb -ia tes…
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Hi,
It seems that in some cases I get a segmentation fault when trying to get the alignment for linclust results.
As always I would be highly thankful for your help to resolve this ;-)
Thanks!…
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Please work to debug the step1_pdb_process.py script.
Script: https://github.com/lemaslab/CAMP/blob/master/data_prepare/step1_pdb_process.py
Input Data (RCSB PDB) : Download the fasta files fro…
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I see the first instance of an actor in `pony-bio` as being an implementation of multiple sequence alignment (MSA) after #13 is addressed
Such an actor would be initialized with the MSA parameters …