duncanca mosaik-aligner issues

duncanca / mosaik-aligner

Automatically exported from code.google.com/p/mosaik-aligner

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

The demo won't run

#137 GoogleCodeExporter opened 8 years ago
0
Unexpected results from multiple.bam

#136 GoogleCodeExporter opened 8 years ago
0
Cannot compile mosaik-2.2.3 nor current checkout

#135 GoogleCodeExporter opened 8 years ago
1
MosaikBuild segmentation fault and MosaikAligner hashing reference sequence

#134 GoogleCodeExporter opened 8 years ago
0
error In MosaikAligner "buffer overflow detected when creating the packed cigar string"

#133 GoogleCodeExporter opened 8 years ago
4
MosaikJump stalls

#132 GoogleCodeExporter opened 8 years ago
3
Mismatches/IUPAC codes

#131 GoogleCodeExporter opened 8 years ago
0
Segmentation fault

#130 GoogleCodeExporter opened 8 years ago
0
I have question

#129 GoogleCodeExporter opened 8 years ago
0
FANN Error 3: Wrong version of configuration file, aborting read of configuration file

#128 GoogleCodeExporter opened 8 years ago
0
Assembly in 2.2.3

#127 GoogleCodeExporter opened 8 years ago
0
Segmentation Fault New Version

#126 GoogleCodeExporter opened 8 years ago
1
mmp option MosaikAligner

#125 GoogleCodeExporter opened 8 years ago
1
MosaikSort ERROR message

#124 GoogleCodeExporter opened 8 years ago
0
Problem compiling on Mac OS X

#123 GoogleCodeExporter opened 8 years ago
4
Segmentation fault (core dumped) MosaikAligner

#122 GoogleCodeExporter opened 8 years ago
0
MosaikAligner - when using -om, mate-pairing is not output correctly

#121 GoogleCodeExporter opened 8 years ago
2
MosaikAligner - when using -om, getting "the reference index is out of the range when saving alignments"

#120 GoogleCodeExporter opened 8 years ago
1
Unrecognized nucleotide in hash table: F for MosaikAligner 2.1.33 reading solid read archive

#119 GoogleCodeExporter opened 8 years ago
0
MosaikBuild eror 2.1.33 solid data: length of bases and qualities do not match

#118 GoogleCodeExporter opened 8 years ago
1
MOSAIK fails to align to ambiguity codes in reference

#117 GoogleCodeExporter opened 8 years ago
2
The generated .multiple.bam file is not valid BAM.

#116 GoogleCodeExporter opened 8 years ago
1
MosaikAligner: support for -rur parameter to export unaligned reads?

#115 GoogleCodeExporter opened 8 years ago
0
MosaikAligner: Run out the allocated position memory

#114 GoogleCodeExporter opened 8 years ago
20
FANN Error 1: Unable to open configuration file "" for reading.

#113 GoogleCodeExporter opened 8 years ago
5
Compilation warnings

#112 GoogleCodeExporter closed 8 years ago
2
consensus sequences form the ace or gig file?

#111 GoogleCodeExporter opened 8 years ago
0
compilling on Red Hat 4.1.2-48

#110 GoogleCodeExporter opened 8 years ago
0
MosaikText does not create bam file reference tag not implemented yet.

#109 GoogleCodeExporter opened 8 years ago
0
Unable to make on rhel6

#108 GoogleCodeExporter opened 8 years ago
3
Unable to compile Mosaik in Mac OS X

#107 GoogleCodeExporter opened 8 years ago
1
problem running sample data

#106 GoogleCodeExporter opened 8 years ago
3
Mosaik failed to align reads to a reference genome correctly, but shuffling the chromosomes in the reference genome solved the problem

#105 GoogleCodeExporter opened 8 years ago
0
Building MosaikText fails on Linux 64-bit

#104 GoogleCodeExporter opened 8 years ago
2
linking fails with multiple errors

#103 GoogleCodeExporter opened 8 years ago
2
MosaikText doesn't proceed with large file

#102 GoogleCodeExporter opened 8 years ago
0
Segmentation fault MosaikJump with human genome and

#101 GoogleCodeExporter opened 8 years ago
0
ERROR: Unknown combination found when converting to basespace: [Y] & [T]

#100 GoogleCodeExporter opened 8 years ago
2
MosaikBuild error parsing PE Solid .csfasta/.qual

#99 GoogleCodeExporter opened 8 years ago
0
Is AIX on IBM Power7 a known-working machine architecture/OS?

#98 GoogleCodeExporter opened 8 years ago
0
Speed of MosaikAligner

#97 GoogleCodeExporter opened 8 years ago
0
cannot build MaikTools for perl

#96 GoogleCodeExporter opened 8 years ago
1
MosaikSort error - when determining whether to apply mate-pair or paired-end constraints, an irregularity in the alignment model counts was discovered.

#95 GoogleCodeExporter opened 8 years ago
1
Error in SAM column ISIZE on a negative ISIZE value (Bug in MosaikText.cpp:720).

#94 GoogleCodeExporter opened 8 years ago
0
Uunexpected reloc type in static binaryErreur de segmentation

#93 GoogleCodeExporter opened 8 years ago
0
ERROR: Unable to create thread for progress counter.

#92 GoogleCodeExporter opened 8 years ago
0
Read Names are Trimmed

#91 GoogleCodeExporter opened 8 years ago
1
MosaikSort - reference index is out the range when saving alignments.

#90 GoogleCodeExporter opened 8 years ago
3
MosaikAligner, using illumina pair-end 36bp reads

#89 GoogleCodeExporter opened 8 years ago
0
MosaikJump got stuck in writing position databases

#88 GoogleCodeExporter opened 8 years ago
0