Open GoogleCodeExporter opened 8 years ago
All alignments (including unique, multiple, and unmapped) are kept in
<NAME>.bam.
The multiple.bam actually is like a mapping distribution. Once we got multiple
mappings for a mate/read, we record the chromosome ids and positions of them in
multiple.bam. More precisely, if -om is not enabled, only chromosome ids and
positions are shown in multiple.bam. bamtools
(https://github.com/pezmaster31/bamtools) can handle that bam.
Original comment by WanPing....@gmail.com
on 9 Feb 2012 at 3:36
Original issue reported on code.google.com by
zyklenf...@gmail.com
on 9 Feb 2012 at 8:12