We are currently working on renewing the funding supporting the development of our sequencing analysis tools. If you find this software, or any of our other tools useful in your research, and are willing to provide a letter of support to this effect, would you please contact the PI, Gabor Marth via email at marth (at) bc (dot) edu? We will be very thankful for your feedback.

================================================================================ Mosaik 2.0 Release Distribution Documentation 2011-04-25 Michael Stromberg & Wan-Ping Lee Marth Lab, Boston College Biology Department

Compiling the source code

Just enter the src directory, glance at the README file, and type "make"

Running the demo

To see a full list of the available command line options, enter the bin directory and run any of the program without any extra parameters.

Included in this release is an Illumina data set featuring reads C. elegans chromosome 2.

To test Mosaik with this data set, just enter the demo directory and type Build, and Align to run the appropriate scripts.

example:

cd demo ./Build.sh ./Align.sh

The resulting bam file (c_elegans_chr2_test.mka.bam) will be found in the demo/sequence_archives directory.