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duncanca / mosaik-aligner

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The demo won't run #137

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
What steps will reproduce the problem?
1. On a clean Biolinux install
2. git clone https://github.com/wanpinglee/MOSAIK.git
3. cd into src
4. make
5. cd into demo
6. ./Build.sh
7. ./Align.sh

What is the expected output? What do you see instead?

I expected to see an alignment, instead I see this:

Aligning read library (5000):
 0% [                                                                                                                                                                  ]                                  |ERROR: buffer overflow detected when creating the packed cigar string.

What version of the product are you using? On what operating system?
MOSAIK 2.2        
Release Distribution
2013-09-20

Please provide any additional information below.
I only ran the demo to see what was going wrong when I tried aligning some 
unpaired IonTorrent reads to a reference. MosaikBuild runs just find on both 
the reference and the reads. MosaikAlign unceremoniously returns an incredibly 
unhelpful "segmentation fault (core dumped)".

Original issue reported on code.google.com by timdierc...@gmail.com on 28 Jul 2015 at 4:13