duncanca / mosaik-aligner

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MosaikBuild eror 2.1.33 solid data: length of bases and qualities do not match #118

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago
What steps will reproduce the problem?
MosaikBuild -fr testset_1510036reads.csfasta -fq testset_1510036reads.qual -out 
test.dat -st solid

What is the expected output? What do you see instead?
Expected output: a succesfully build read archive.

Instead:
------------------------------------------------------------------------------
MosaikBuild 2.1.33                                                  2011-11-08
Michael Stromberg & Wan-Ping Lee  Marth Lab, Boston College Biology Department
------------------------------------------------------------------------------

- setting read group ID to: ZHZFAPMY18S
- setting sample name to: unknown
- setting sequencing technology to: solid

- parsing FASTA files:
reads: 0 |ERROR: The lengths of bases(50) and qualities(49) of Read 
(2_38_510_F3) didn't match.

I checked length of bases and qualities for indicated read, but they do match 
up (both 50).

What version of the product are you using? On what operating system?
Mosaik 2.1.33
Linux 2.6.18 x86_64

This is the same issue as reported in: 
http://code.google.com/p/mosaik-aligner/issues/detail?id=72. With MosaikBuild 
1.1.0021 there is no error (with same files and same command as specified 
above).

Original issue reported on code.google.com by djiem...@gmail.com on 18 Apr 2012 at 9:26

GoogleCodeExporter commented 8 years ago
I am facing the same issue. Did this ever got resolved?

Original comment by srikarch...@gmail.com on 30 Oct 2012 at 1:27