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hello
i used stereo seq to analysis sp, want to ask how to create score for focus cell type ,i look for u example nk_cells is
AAACAGTGTTCCTGGG-1_-0 0.061412
AAACCGGGTAGGTACC-1_-0 0.3088…
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@kallewesterling's [doc for application & feedback review
](https://thealanturininstitute.sharepoint.com/:w:/r/sites/DataCulture/_layouts/15/doc.aspx?sourcedoc=%7B13e8ec95-e5a0-49ed-9a55-0d4e2e81ea39%…
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Hi,
I have zero-inflated data which lead me to your package for BRT analysis. However, there is also spatial autocorrelation in my data. I currently use the `fold.vector` parameter in `gbm.step` (d…
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From Chris Shults (+ my edits for gEAR purposes)
gEAR would be most useful for users to compare their scRNASeq or scATACSeq data to for cell annotation. They should directly take the unlabeled clus…
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Running SpaceMarkers with Visium HD seems to be very computationally intensive. The rate-limiting step seems to be getPairwiseInteractingGenes. These are the parameters I used to run it on jhpce and t…
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**Describe the bug**
Hi there, I'm running the public MERFISH tutorial using spatialdata `0.2.2` and spatialdata_plot `0.2.4` (https://spatialdata.scverse.org/en/stable/tutorials/notebooks/notebooks/…
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Point shapefile can be input into Spatial Data Analysis (tested on Range polygon shapefile) without warning user that the wrong data type has been input. Spatial data analysis is run with the followin…
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sdata
SpatialData object
├── Images
│ └── 'morphology_focus': DataTree[cyx] (5, 34119, 39776), (5, 17059, 19888), (5, 8529, 9944), (5, 4264, 4972), (5, 2132, 2486)
├── Labels
│ ├── …
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I am currently using WarpX to diagnose the electric field using both the reduce and field diagnostics, but I noticed that the data obtained from these two diagnostics differ significantly in magnitude…
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### Primary Contact
joseph.caracappa@noaa.gov
### Secondary Contact
_No response_
### Data Name (This will be the displayed title in Catalog)
Bottom temperature - Seasonal Gridded
##…