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As part of the EA paper we should release code for an external user to extract easily the features we use from a data snippet. This would require as input at least the raw AP / LF files + timestamps f…
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**Describe the bug**
When I use spikeinterface se.read_neuralynx_sorting to create a sorting and then plot the rasters there are more segments than expected
**To Reproduce**
Run the attached scri…
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FYI: A spike is an agile term referring to a ticket designed purely for research.
Our filtering on the server side could use some work. Read this to understand what filtering exactly is: https://www.…
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This only failed on one OS/one python version. Not sure if this is a problem in generate_sorting_to_inject which can cause some failures. We can leave this issue open to monitor if this problem happen…
zm711 updated
2 months ago
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Hi I encountered an issue that I lost the spike train for the merged units when I extract the waveform from the sliced sorting from a concatenated sorting
I used the following line the generate a c…
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[continued from https://github.com/AllenNeuralDynamics/aind-ephys-preprocessing/issues/9]
Some checks in spikeinterface still appear to be incompatible with spikes from multiple recordings:
trun…
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Hello there,
I would like to combine .continuous files that were mistakenly saved in separate recordings. I would like the outputs of this merger to be saved as .continuous files with the same header…
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Required for https://github.com/elastic/kibana/issues/167537.
We should look into Javascript object key sorting to determine how feasible it is to make a deterministic saved object for easy diffing…
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During the last presentation, Joshua raised the point, as I interpret, that if the dimensionality of unit(putative neuron) activity will be reduced (e.g. via PCA or ICA) anyway, why bother to sort the…
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```python
from spikeinterface.core import create_sorting_analyzer
from spikeinterface.core import generate_ground_truth_recording
job_kwargs = dict(
n_jobs=1,
progress_bar=False,
…