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I have tried different types of pictures including tif and npdi and whenever I import pictures, the programe exits immediately.
Does it must run with Nivida GPU,
Environment: Windows 11 64bit w…
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Thank you for the tool. I am excited to try it out with my own data in a weakly supervised fashion.
If I understand right I will need the centroids of the nuclei and binary segmentation of my image…
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hi, I'm a new person in this field and I need this method to normalize the data I have because the data variation is too big. I work with WSI data but have limitations in device. I've tried several pa…
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I've made this into an issue so we can have a coherent thread in which we can reference parts of the code and I can answer questions about the workflow.
I have just done some preliminary testing: …
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I have been training a set of CT images (already pre-processed) with two classes in GaNDLF (0.16) on a NVidia 3090 24GB GPU. I think I have set all the settings and hyperparameters to demand the minim…
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Create a list of pathology-related components, pipelines, bundles, etc.
drbeh updated
2 years ago
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just rgb [0-1]? or the 'usual' imagenet mean/std normalization?
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This is not an issue, more a question or suggestion from the authors.
**What do you think is the best preprocessing pipeline for IHC slides?**
It is quite standard nowadays to apply stain normaliz…
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As we have support for different backends, it would probably be a good idea to have unit tests to verify that we achieve the same results using the three different backends: pytorch, numpy, and tensor…
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Hi @andreped
Thanks for this great software and workflow.
I would like to generate a model which classifies the epithelia in the colon from WSIs into villi (usually at the boundary) and crypts (c…