issues
search
mehta-lab
/
microDL
3D virtual staining with 2D and 2.5D U-Nets
BSD 3-Clause "New" or "Revised" License
27
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update README.md
#243
mattersoflight
closed
1 year ago
1
Bump scipy from 1.2.1 to 1.10.0
#242
dependabot[bot]
opened
1 year ago
0
Paper Figure 5.
#241
yingmuzhi
opened
1 year ago
3
Brain_2.5DUNet
#240
yingmuzhi
opened
1 year ago
4
Bsd3
#239
mattersoflight
closed
1 year ago
0
Update LICENSE
#238
mattersoflight
closed
1 year ago
0
merge recent changes into pytorch_implementation
#237
mattersoflight
closed
1 year ago
0
Inference in lightning
#236
ziw-liu
closed
1 year ago
0
Multi-GPU training
#235
ziw-liu
closed
1 year ago
1
Fix model architecture for deployment to ONNX
#234
ziw-liu
closed
1 year ago
1
Data storage schema
#233
ziw-liu
closed
1 year ago
1
Improve data loading performance
#232
ziw-liu
closed
1 year ago
1
unify preprocessing CLI with lightning CLI
#231
mattersoflight
closed
1 year ago
1
Determine default log directory from config
#230
ziw-liu
closed
1 year ago
1
Codebase cleanup
#229
ziw-liu
closed
1 year ago
2
Runtime error testing lightning pipeline
#227
Soorya19Pradeep
closed
1 year ago
5
Unexpected behavior in model batch prediction?
#225
Christianfoley
closed
1 year ago
8
Add evaluation metrics script
#224
Soorya19Pradeep
closed
1 year ago
1
Normalization statistics don't need to be stored with additional key
#223
Christianfoley
closed
1 year ago
1
save logs to mydata/lightening_logs
#222
mattersoflight
closed
1 year ago
0
Data loading and training loop implementation with lightning
#220
ziw-liu
closed
1 year ago
1
add mask as channel in preprocessing
#219
Soorya19Pradeep
closed
1 year ago
6
Remove flatfield correction from the pipeline
#218
ziw-liu
closed
1 year ago
0
Training on gpu-c-1 scratch space
#217
Soorya19Pradeep
closed
1 year ago
7
Bump tensorflow from 1.13.1 to 2.11.1
#216
dependabot[bot]
closed
1 year ago
1
Training error without augmentation
#215
Soorya19Pradeep
closed
1 year ago
1
Make model architecture compatible with deployment
#214
ziw-liu
closed
1 year ago
9
Fluorescence channel 3D volume segmentation
#213
Soorya19Pradeep
closed
1 year ago
0
data problem
#212
Valort-KT
closed
1 year ago
3
Does inference need its own config file?
#211
ziw-liu
closed
1 year ago
1
Fix inference with iohub
#210
ziw-liu
closed
1 year ago
0
Iohub dependency - [Testing PR]
#209
Christianfoley
closed
1 year ago
0
Convert existing tensorflow models to pytorch
#208
Soorya19Pradeep
closed
1 year ago
3
intensity.csv
#207
yingmuzhi
closed
1 year ago
1
Inference shouldn't use gunpowder
#206
Soorya19Pradeep
closed
1 year ago
5
z-score
#204
yingmuzhi
closed
1 year ago
1
Metadata Structure
#203
Christianfoley
closed
1 year ago
2
configs should use channel names and not channel index
#201
mattersoflight
closed
1 year ago
2
Improvement of fluorescence segmentation
#200
Soorya19Pradeep
closed
1 year ago
0
Improve masking of fluorescence data in preprocessing
#199
Soorya19Pradeep
closed
1 year ago
2
Flatfielding computation error on gunpowder dataloading branch
#198
Christianfoley
closed
1 year ago
2
Config issues on gunpowder dataloading branch
#197
Christianfoley
closed
1 year ago
12
Added extra metrics to metrics evaluation
#196
Soorya19Pradeep
closed
1 year ago
1
use click for CLI in microDL 2.0.0
#195
mattersoflight
closed
1 year ago
2
Actions docs
#194
jennyfolkesson
closed
1 year ago
2
Jennyfolkesson patch 2
#193
jennyfolkesson
closed
1 year ago
0
Forgot dot
#192
jennyfolkesson
closed
1 year ago
2
Add permalink to docs readme
#191
jennyfolkesson
closed
1 year ago
5
Inference for gunpowder dataloading
#190
Christianfoley
closed
1 year ago
5
make microDL pip installable
#189
mattersoflight
closed
1 year ago
1
Next