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- [ ] Rewrite R1Q5 based on answer from Lasse
- [x] Redo table 1
- [x] Window size
- [x] Stat test
- [x] Add to document
- [x] Adjust writing
- [x] Redo figure 2
- [x] Window size
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We should implement various ways to test for goodness of fit.
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Are there tools and would it be meaningful to run generated tests against all possible input like in clojure.
The big issue here is understanding what the expected outcome for a set of inputs woul…
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The `print_summary` method in the `lifelines.statistics.StatisticalResult` class was not correctly handling the `decimals` argument when no explicit `style` was provided. This led to the output table …
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Running SpaceMarkers with Visium HD seems to be very computationally intensive. The rate-limiting step seems to be getPairwiseInteractingGenes. These are the parameters I used to run it on jhpce and t…
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tests, t-test, anova, regression, normality tests.
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This is a nice function I like how it all come neatly together to grab the data for the test. In this instance I don't think Kruskall-Wallis is a correct test but I'm not sure we need to…
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See https://arxiv.org/pdf/1902.10142
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Drake equation is not a valid algorithm for calculating a probability of success, the factors are not valid either.
Reminder of how the Drake equation works:
1. It uses a bunch of fractions that r…
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In the file `data_preprocessing/6_survival_primitive_vs_metastasis.py` we perform the following log-rank test.
- Null Hypothesis (H₀): There is no difference in survival distributions between the …