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neuroinformatics-unit
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rsp-vision
Analysis and visualization of calcium imaging data from retrosplenial cortex
BSD 3-Clause "New" or "Revised" License
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update pypi action to latest
#94
alessandrofelder
closed
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#93
pre-commit-ci[bot]
opened
7 months ago
0
ROI numbers between "Murakami plot" and "Single-ROI visualisation" in dashboard are off by 1
#92
chrytsi
closed
7 months ago
1
Indicate preferred SF/TF and elipse gradient in fitted response matrix
#91
chrytsi
opened
7 months ago
0
Plot all trials in facet plot of dashboard
#90
chrytsi
closed
7 months ago
1
Single-ROI visualisation in dashboard - ROI list not appearing
#89
chrytsi
closed
7 months ago
1
CX_142_2_hR_RSPd_monitor_front - error
#88
chrytsi
opened
7 months ago
0
CX_142_2_hL_RSPd_monitor_front - error
#87
chrytsi
opened
7 months ago
1
CX_79_4_hL_RSPd_monitor_right - error - cannot debug locally, requires too much memory
#86
chrytsi
opened
7 months ago
0
Use updated upload_pypi action
#85
niksirbi
closed
7 months ago
0
[pre-commit.ci] pre-commit autoupdate
#84
pre-commit-ci[bot]
closed
7 months ago
1
[pre-commit.ci] pre-commit autoupdate
#83
pre-commit-ci[bot]
closed
11 months ago
1
[pre-commit.ci] pre-commit autoupdate
#82
pre-commit-ci[bot]
closed
1 year ago
1
Load raw suite2p data
#81
lauraporta
closed
7 months ago
1
Add overview of dataset plots to the dashboard
#80
lauraporta
opened
1 year ago
0
Add tests for dashboard helper functions
#79
lauraporta
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#78
pre-commit-ci[bot]
closed
1 year ago
1
[BUG] Logs get mixed up when running slurm jobs
#77
lauraporta
closed
1 year ago
0
[BUG] Spatial frequencies assertion error
#76
lauraporta
opened
1 year ago
2
Run all analysis on the cluster: methods, scripts and bug fixes
#75
lauraporta
closed
7 months ago
1
Analyse also static-drift stimuli pattern (prv: [BUG] Signal dataframe is not created correctly)
#74
lauraporta
opened
1 year ago
2
[BUG] Cannot read some files with h5py
#73
lauraporta
closed
1 year ago
1
[BUG] One ROI is repeated twice in the murakami plot
#72
lauraporta
opened
1 year ago
0
[BUG] Errors in the data table of the dashboard
#71
lauraporta
opened
1 year ago
1
Spatial choice of the ROI in the dashboard
#70
lauraporta
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#69
pre-commit-ci[bot]
closed
1 year ago
1
[BUG] Selenium / DevTools exception thrown when making simple test for dashboard
#68
lauraporta
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#67
pre-commit-ci[bot]
closed
1 year ago
1
Test new cookiecutter
#66
lauraporta
closed
1 year ago
3
[pre-commit.ci] pre-commit autoupdate
#65
pre-commit-ci[bot]
closed
1 year ago
1
Remove leftover flake8
#64
niksirbi
closed
1 year ago
1
More plots in the dashboard, focus on single ROI
#63
lauraporta
closed
1 year ago
2
Refactor tests as suggested
#62
lauraporta
opened
1 year ago
0
Dashboard version 1.0, datatable and murakami plot
#61
lauraporta
closed
1 year ago
2
Saving analysis outputs in folders according to SWC-Blueprint
#60
lauraporta
closed
1 year ago
2
Rename variables and columns of dataframes from "subtracted" to "normalized_response" or similar
#59
lauraporta
opened
1 year ago
0
Use namedtuple() to improve return statements
#58
lauraporta
opened
1 year ago
0
Analyse data from experiments run on multiple days
#57
lauraporta
closed
1 year ago
2
Perform the analysis also by pooling data from all directions
#56
lauraporta
closed
1 year ago
0
Pool directions
#55
lauraporta
closed
1 year ago
1
Analyse and visualise the data of experiments lasting more than one day
#54
lauraporta
closed
1 year ago
0
Analyse and visualise the data of experiments lasting more than one day
#53
lauraporta
closed
1 year ago
0
Merge dev into main
#52
lauraporta
closed
1 year ago
0
Nice typing, I am not very sure about the difference between using the `typing` module or `numpy.typing` module and the standard types (e.g. `typing.Dict` vs. `dict`), `np.ndarray` vs. `numpy.typing.NDArray`). However down the line it might be useful to be using the typing module type hints. I think they let you do a bit more (e.g. `NDArray[np.integer]` or `typing.Dict[str, Dict[str, int]]` [(e.g.)](https://stackoverflow.com/questions/52593803/how-to-set-the-python-type-hinting-for-a-dictionary-variable). (though this might be possible with pyton standard types). But they don't seem to have everything covered yet, like `str` or `int`
#51
lauraporta
closed
1 year ago
1
Awesome! that's great, only thing to add is these values could be saved to a `.csv` and tested against as part of the overall test suite.
#50
lauraporta
closed
1 year ago
1
Improve analysis
#49
lauraporta
closed
1 year ago
2
Stats
#48
lauraporta
closed
1 year ago
1
Apply changes generated using cruft
#47
lauraporta
closed
1 year ago
1
Improve analysis
#46
lauraporta
closed
1 year ago
2
Open on demand deployment
#45
lauraporta
opened
1 year ago
0
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