-
**Interop Contact**: Jack DiGiovanna
**Active in 2021**: Active,
**Researche**r: Wilson McKerrow [PDC (CRDC), GDC (CRDC), and GTEx (AnVIL) data]
## Analysis Question
The Fenyo lab is studying how re…
-
When I ran Msisensor, I found the results are quite different between using the deduplicated bam and not deduplicated bam. I wonder which bam shoud be used , the deduplicated bam or not deduplicated …
-
### Instructions
The github issue tracker is for bug reports, feature requests, and API documentation requests. General questions about how to use the GATK, how to interpret the output, etc. should…
-
Hello,
I think the **label_image** is not able to show the segmentation in **view** function in itk 3.5.0. Is there a working example of **view** with **label_image** that I can run in colab? I a…
-
See this paper: http://www.nature.com/nbt/journal/v31/n3/abs/nbt.2514.html
(and the supplementary information) for details.
-
Hi, I have a quetion about removing cnv like noise
First, I use Run_numbat(function) with option like this
`
out = run_numbat(
count_mat, # gene x cell integer UMI count matrix
ref_h…
-
#### Summary
I have a test case for a 4bp indel where the allele frequencies and reported probabilities look wrong, while changing the allele to be just an SNV gives the correct results.
#### Deta…
-
So I found this interesting paper and wanted to know your thoughts :
[A Fast and Refined Cancer Regions Segmentation Framework in Whole-slide Breast Pathological Images](https://www.nature.com/arti…
-
Hi
I have BWA bam files. I tried to run ./Socrates realignment step but got an error message:
Add anchor information into re-alignment BAM file
Command given my me is:
./Socrates inputbam(generated…
-
I am wondering if there is any documentation of how to use regexner and TokensRegex annotators in Python wrapper of corenlp. And also, how can I use my own customised regular expression?